Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B07
(782 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa ... 403 e-112
sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa ... 402 e-112
sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa ... 401 e-111
sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa ... 399 e-111
sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa ... 360 2e-99
sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa ... 345 6e-95
sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (N... 333 2e-91
sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (N... 328 1e-89
sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1... 327 2e-89
sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (N... 320 3e-87
>sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 403 bits (1035), Expect = e-112
Identities = 187/222 (84%), Positives = 208/222 (93%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKDEDRIF+NLYGR+DW L+ A+SRG W+KTKEI+LKG +WIL EIK SGLRGRGGAGFP
Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FMNKPSD RPKYLVVNADEGEPGTCKDREI+RHDPH LVEGCL+ G+AMGA AA
Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGEFYNEASN+QVAI EAY+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIE
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
SIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICR
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICR 256
>sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 402 bits (1032), Expect = e-112
Identities = 186/222 (83%), Positives = 207/222 (93%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKDEDRIF+NLYGR+DW L+ A SRG W+KTKEI+LKG +WIL E+K SGLRGRGGAGFP
Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FMNKPSD RPKYLVVNADEGEPGTCKDREI+RHDPH LVEGCL+ G+AMGA AA
Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGEFYNEASN+QVAI EAY+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIE
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
SIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICR
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICR 256
>sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 401 bits (1030), Expect = e-111
Identities = 185/222 (83%), Positives = 208/222 (93%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKDEDRIF+NLYGR+DW L+ ++SRG W+KTKEI+LKG +WIL EIK SGLRGRGGAGFP
Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FMNKPSD RPKYLVVNADEGEPGTCKDREI+RHDPH L+EGCL+ G+AMGA AA
Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGEFYNEASN+QVAI EAY+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIE
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
SIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICR
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICR 256
>sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 399 bits (1024), Expect = e-111
Identities = 185/222 (83%), Positives = 206/222 (92%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKDEDRIF+NLYGR+DW L+ A+ RG W+KTKEI+LKG +WIL E+K SGLRGRGGAGFP
Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FMNKPSD RPKYLVVNADEGEPGTCKDREIMRHDPH LVEGCL+ G+AMGA AA
Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGEFYNEASN+QVAI EAY+AG IGKNACG+ +DFD+F+ RGAGAYICGEETALIE
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIE 214
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
SIEGKQGKPRLKPPFPAD+G+FGCPTTV+NVETVAV+PTICR
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICR 256
>sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 493
Score = 360 bits (925), Expect = 2e-99
Identities = 167/225 (74%), Positives = 192/225 (85%), Gaps = 4/225 (1%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKD+DRIF NLYGRY L+ A G W KTKEI+LKGH+WI+ E+K SGLRGRGGAGFP
Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103
Query: 300 TGMKWGFMN----KPSDRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGA 467
+G+KW FMN D+P+YLVVNADEGEPGTCKDREIMR DPH LVEGCL+AG+AM A
Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163
Query: 468 VAAYIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETA 647
AAYIYIRGEF EA+ +Q AINEAY G IGKNACG+G+DFD+++HRGAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223
Query: 648 LIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
LIES+EGK GKPRLKPPFPA +GLFGCP+TV+NVETVAVAPTICR
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICR 268
>sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 496
Score = 345 bits (886), Expect = 6e-95
Identities = 159/225 (70%), Positives = 191/225 (84%), Gaps = 4/225 (1%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LKD+DRIF+NLYG + L+ AM G W +TK+I+LKGH+W+++E+K SGLRGRGGAGFP
Sbjct: 46 LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105
Query: 300 TGMKWGFMN----KPSDRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGA 467
+G+K+ FMN RP+YLVVNADEGEPGTCKDREIMR DP L+EGCL+ G+AM A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165
Query: 468 VAAYIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETA 647
AAY+YIRGEFY EA+ +Q AINEAY+AG IGKNACGTG+DFD+++HRG GAY+CGEET+
Sbjct: 166 NAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225
Query: 648 LIESIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
LIESIEGK GKPRLKPPFPA +GLFGCP+TV+NVETVAV PTI R
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMR 270
>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 333 bits (855), Expect = 2e-91
Identities = 152/221 (68%), Positives = 187/221 (84%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
LK+ED+IF+NLYG+ + L+ + RG W+ TK +I KG ++I++E+K SGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGFS 61
Query: 300 TGMKWGFMNKPSDRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAY 479
TGMKW FM K S++P YLVVNADE EPGTCKDR+I+R +PH L+EGCLIA A+GA Y
Sbjct: 62 TGMKWSFMPKNSEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANTCY 121
Query: 480 IYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIES 659
IYIRGEFYNEASNMQ A++EAYK G IGKNACG+GFD +I++HRGAGAYICGEETAL+ES
Sbjct: 122 IYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLES 181
Query: 660 IEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
+EGK+G PRLKPPFPA GL+GCPTT++NVE++AV PTI R
Sbjct: 182 LEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILR 222
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 431
Score = 328 bits (841), Expect = 1e-89
Identities = 151/222 (68%), Positives = 182/222 (81%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
L D DRIF+N+YG +D L+ AM+RGHW T I+ G +WI+ ++K SGLRGRGGAGFP
Sbjct: 2 LNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGFP 61
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FM K SD RP +LV+NADE EPGTCKDREIMRHDPHTL+EG LIAG AMGA AA
Sbjct: 62 TGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARAA 121
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGE+ E +Q AI+E Y+AG IGKNAC + +DFD+++H GAGAYICGEETAL+E
Sbjct: 122 YIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALLE 181
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
S+EGK+G PR+KPPFPA GL+GCPTTV+NVE++AV PTI R
Sbjct: 182 SLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILR 223
>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase chain F 1 (NADH dehydrogenase I, chain
F 1) (NDH-1, chain F 1)
Length = 434
Score = 327 bits (839), Expect = 2e-89
Identities = 153/222 (68%), Positives = 185/222 (83%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
L+DEDRIF+N+YG D L+ AM+RGHW TK+ + KG +WI+NE+K SGLRGRGGAGFP
Sbjct: 2 LRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGFP 61
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TG+KW FM K SD RP YLVVNADE EPGTCKDR+IMRHDPHTL+EGC+IA AMGA AA
Sbjct: 62 TGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHAA 121
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIY+RGEF E +Q AI+E Y+ G +GKN G+D DI++H GAGAYICGEETAL+E
Sbjct: 122 YIYVRGEFIREREALQAAIDECYEYGLLGKNN-KLGYDIDIYVHHGAGAYICGEETALLE 180
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
S+EGK+G+PRLKPPFPA++GL+GCPTTV+NVE++AV PTI R
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILR 222
>sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (NADH dehydrogenase I, chain 1)
(NDH-1, chain 1)
Length = 431
Score = 320 bits (820), Expect = 3e-87
Identities = 152/222 (68%), Positives = 178/222 (80%), Gaps = 1/222 (0%)
Frame = +3
Query: 120 LKDEDRIFSNLYGRYDWHLQKAMSRGHWFKTKEIILKGHEWILNEIKISGLRGRGGAGFP 299
L D+DRIF+NLYG D L A RGHW T II +G + I++E+K SGLRGRGGAGFP
Sbjct: 2 LNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFP 61
Query: 300 TGMKWGFMNKPSD-RPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAA 476
TGMKW FM K SD RP YLV+NADE EP TCKDREIMRHDPHTL+EG LIA AMGA AA
Sbjct: 62 TGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAA 121
Query: 477 YIYIRGEFYNEASNMQVAINEAYKAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIE 656
YIYIRGEF E +Q AI+E Y AG +G+NA G+G+DFD+++H GAGAYICGEETAL+E
Sbjct: 122 YIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLE 181
Query: 657 SIEGKQGKPRLKPPFPADIGLFGCPTTVSNVETVAVAPTICR 782
S+EGK+G PR+KPPFPA GL+GCPTTV+NVE++AV PTI R
Sbjct: 182 SLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILR 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,954,540
Number of Sequences: 369166
Number of extensions: 2063460
Number of successful extensions: 5582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5550
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)