Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B05
(854 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08730|GLYG_RAT Glycogenin-1 295 1e-79
sp|Q9R062|GLYG_MOUSE Glycogenin-1 292 9e-79
sp|P13280|GLYG_RABIT Glycogenin-1 290 5e-78
sp|P46976|GLYG_HUMAN Glycogenin-1 286 4e-77
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 252 1e-66
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 118 2e-26
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 84 7e-16
sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chro... 36 0.16
sp|Q4HVS2|GNT1_GIBZE Glucose N-acetyltransferase 1 (N-acety... 35 0.20
sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-ac... 35 0.20
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 295 bits (755), Expect = 1e-79
Identities = 150/273 (54%), Positives = 182/273 (66%), Gaps = 14/273 (5%)
Frame = +2
Query: 8 MVNVLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREE 187
MV+VLDS D +L L++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREE
Sbjct: 60 MVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREE 119
Query: 188 LSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDI 367
LSAAPDPGWPDCFNSGVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI
Sbjct: 120 LSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDI 179
Query: 368 KHHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGC 541
HLPFVYN S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+
Sbjct: 180 TKHLPFVYNLSSLSIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVKCESQDPI 239
Query: 542 GQNYESLQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSFVP-HEGKF 685
+ E L LWW TF PLL M V G ++ L P +
Sbjct: 240 VSHPEFLNLWWDTFTTNVLPLLQHHGLVKDAGSYLMMEHVTGALSDLSFGEAPPASQPSL 299
Query: 686 SPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 784
S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 300 SSEERKERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 292 bits (747), Expect = 9e-79
Identities = 149/273 (54%), Positives = 181/273 (66%), Gaps = 14/273 (5%)
Frame = +2
Query: 8 MVNVLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREE 187
MV+VLDS D +L L++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREE
Sbjct: 60 MVDVLDSGDSAHLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREE 119
Query: 188 LSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDI 367
LSAAPDPGWPDCFNSGVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI
Sbjct: 120 LSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDI 179
Query: 368 KHHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV--IFQEGC 541
HLPFVYN S + YSYLPA+ F + KV+HF+G KPW++T++ T +V Q+
Sbjct: 180 TKHLPFVYNLSSISIYSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSVNCDSQDPT 239
Query: 542 GQNYESLQLWWTTFIAYTKPLLHDE-----------MGGVCGRMASLDVSSF-VPHEGKF 685
+ E L LWW TF PLL M V G ++ L +
Sbjct: 240 VSHPEFLNLWWDTFTTNVLPLLQHHGLVKDASSYLMMEHVSGALSDLSFGEAPAAPQPSM 299
Query: 686 SPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 784
S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 300 SSEERKERWEQGQADYMGADSFDNIKRKLDTYL 332
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 290 bits (741), Expect = 5e-78
Identities = 144/272 (52%), Positives = 184/272 (67%), Gaps = 14/272 (5%)
Frame = +2
Query: 11 VNVLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREEL 190
V++LDS D +L L++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREEL
Sbjct: 61 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120
Query: 191 SAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIK 370
SAAPDPGWPDCFNSGVFVY+PS++TY +LL A ++GSFDGGDQGLLN FF++W+T DI+
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIR 180
Query: 371 HHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQ--EGCG 544
HLPF+YN S + YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V + +
Sbjct: 181 KHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTM 240
Query: 545 QNYESLQLWWTTFIAYTKPLLHD--EMGGVCGRMASLDVSSFVPH----------EGKFS 688
+ + L +WW F PLL + C DVS V H + S
Sbjct: 241 THPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVS 300
Query: 689 PKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 784
+ ++ WE G DY G D F+NIK LD+ L
Sbjct: 301 SEERKERWEQGQADYMGADSFDNIKKKLDTYL 332
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 286 bits (733), Expect = 4e-77
Identities = 149/291 (51%), Positives = 183/291 (62%), Gaps = 32/291 (10%)
Frame = +2
Query: 8 MVNVLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREE 187
MV+VLDS D +L L++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLF+REE
Sbjct: 60 MVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE 119
Query: 188 LSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDI 367
LSAAPDPGWPDCFNSGVFVY+PS++TY +LL A ++GSFDGGDQG+LN FFS+W+T DI
Sbjct: 120 LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI 179
Query: 368 KHHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQ 547
+ HLPF+YN S + YSYLPA+ F A KV+HF+G KPW++T+D T +V E
Sbjct: 180 RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV-KSEAHDP 238
Query: 548 NY---ESLQLWWTTFIAYTKPLLHD-------------------EMGGVCGRMASLDVSS 661
N E L LWW F PLL + CG DVS
Sbjct: 239 NMTHPEFLILWWNIFTTNVLPLLQQFGLVKDTCSYVNVLSDLVYTLAFSCGFCRKEDVSG 298
Query: 662 FVPH----------EGKFSPKSHQQAWEHGIIDYRGLDRFENIKMHLDSKL 784
+ H + S + ++ WE G DY G D F+NIK LD+ L
Sbjct: 299 AISHLSLGEIPAMAQPFVSSEERKERWEQGQADYMGADSFDNIKRKLDTYL 349
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 252 bits (643), Expect = 1e-66
Identities = 119/232 (51%), Positives = 152/232 (65%), Gaps = 20/232 (8%)
Frame = +2
Query: 11 VNVLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREEL 190
VN++DS D I+L L+RPELG+T TKLHCW L YSKCVF+DADTLV+ N+D+LF+R E
Sbjct: 94 VNLIDSADYIHLAFLKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEF 153
Query: 191 SAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIK 370
SAAPDPGWPDCFNSGVFV++PS+ T+ LLQ A++ GSFDG DQGLLN FF NWST DI
Sbjct: 154 SAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIH 213
Query: 371 HHLPFVYNCVSQAFYSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVIFQEGCGQN 550
HLPF+YN S Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+ Q +
Sbjct: 214 KHLPFIYNLSSNTMYTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVLEQGSVSSS 273
Query: 551 YES---LQLWWTTFIAYTKP-----------------LLHDEMGGVCGRMAS 646
L LWWT + P L H ++GG C AS
Sbjct: 274 QHQAAFLHLWWTVYQNNVLPLYKSVQAGEARASPGHTLCHSDVGGPCADSAS 325
Score = 33.5 bits (75), Expect = 0.77
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 680 KFSPKSHQQAWEHGIIDYRGLDRFENIKMHLD 775
+ SP+ ++ WE G IDY G D F I+ LD
Sbjct: 466 ELSPEEERRKWEEGRIDYMGKDAFARIQEKLD 497
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 118 bits (296), Expect = 2e-26
Identities = 72/180 (40%), Positives = 96/180 (53%), Gaps = 23/180 (12%)
Frame = +2
Query: 41 NLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE---------REELS 193
NL LL+RPEL T K W LVQ+ + +F+DADTL + + FE R +++
Sbjct: 89 NLELLKRPELSHTLLKARLWELVQFDQVLFLDADTLPLNK--EFFEILRLYPEQTRFQIA 146
Query: 194 AAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS---NWSTKD 364
A PD GWPD FN+GV + P +D L F I S DG DQG+ N FF+ N+S K+
Sbjct: 147 AVPDIGWPDMFNTGVLLLIPDLDMATSLQDFLIKTVSIDGADQGIFNQFFNPICNYS-KE 205
Query: 365 IKH---------HLPFVYNCVSQAF-YSYLPAYTHFRADIKVLHFIGPHKPW-HHTFDSD 511
+ H LPF YN + Y PA F+ I+++HFIG KPW +T D D
Sbjct: 206 VLHKVSPLMEWIRLPFTYNVTMPNYGYQSSPAMNFFQQHIRLIHFIGTFKPWSRNTTDYD 265
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 83.6 bits (205), Expect = 7e-16
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Frame = +2
Query: 185 ELSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS-NWSTK 361
++ A D GWPD FNSGV + P DT L + + S DG DQG+LN FF+ N T
Sbjct: 8 QVGAIADIGWPDMFNSGVMMLIPDADTASVLQNYIFENTSIDGSDQGILNQFFNQNCCTD 67
Query: 362 DIKH--------HLPFVYN-CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPW 490
++ L F YN + Y PA +F+ IK++HFIG HKPW
Sbjct: 68 ELVKDSFSREWVQLSFTYNVTIPNLGYQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chromosome I
Length = 371
Score = 35.8 bits (81), Expect = 0.16
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +2
Query: 80 FTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE 178
F+KL + +Q+ K +D+D L+++NIDD+F+
Sbjct: 161 FSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193
>sp|Q4HVS2|GNT1_GIBZE Glucose N-acetyltransferase 1 (N-acetylglucosaminyltransferase)
Length = 431
Score = 35.4 bits (80), Expect = 0.20
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = +2
Query: 77 TFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE 178
+FTKL + QY + + +D+D++V+Q++D+LF+
Sbjct: 239 SFTKLLAFNQTQYDRVLSLDSDSMVLQHMDELFQ 272
>sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-acetylglucosaminyltransferase A)
Length = 460
Score = 35.4 bits (80), Expect = 0.20
Identities = 12/33 (36%), Positives = 25/33 (75%)
Frame = +2
Query: 77 TFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLF 175
+ TKL + +V+Y + V+ D+D+++ +N+D+LF
Sbjct: 178 SMTKLRVFGMVEYKRIVYFDSDSIITRNMDELF 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,719,184
Number of Sequences: 369166
Number of extensions: 2342280
Number of successful extensions: 5538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5526
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)