Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B03
(625 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QYC5|ETBR2_RAT Endothelin B receptor-like protein 2 pr... 26 3.2
sp|Q99JG2|ETBR2_MOUSE Endothelin B receptor-like protein 2 ... 26 3.2
sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3... 30 3.8
sp|Q03751|CSP_DROME Cysteine string protein 25 5.7
>sp|Q9QYC5|ETBR2_RAT Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)
(G-protein coupled receptor 37-like 1) (G-protein
coupled receptor CNS2)
Length = 481
Score = 25.8 bits (55), Expect(2) = 3.2
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 71 CCCCCYHFTSKHQSINTILSPAQLSSIIGT--YLNVSRDHRPTM 196
CCCCC S T+ + ++L + + + Y + R+ P +
Sbjct: 432 CCCCCEECGGASDSSATVSADSKLKAEVSSSIYFHKpreSPPLL 475
Score = 23.5 bits (49), Expect(2) = 3.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 44 PECSARLQYCCCCC 85
P A L CCCCC
Sbjct: 422 PLGQAFLDCCCCCC 435
>sp|Q99JG2|ETBR2_MOUSE Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)
(G-protein coupled receptor 37-like 1)
Length = 481
Score = 25.8 bits (55), Expect(2) = 3.2
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 71 CCCCCYHFTSKHQSINTILSPAQLSSIIGT--YLNVSRDHRPTM 196
CCCCC S T+ + ++L + + + Y + R+ P +
Sbjct: 432 CCCCCEECGGASDSSATVSADSKLKAEVSSSIYFHKpreSPPLL 475
Score = 23.5 bits (49), Expect(2) = 3.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 44 PECSARLQYCCCCC 85
P A L CCCCC
Sbjct: 422 PLGQAFLDCCCCCC 435
>sp|P53971|YNC3_YEAST Hypothetical 108.5 kDa protein in UME3-HDA1 intergenic region
Length = 965
Score = 30.4 bits (67), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 14 CCWKCHLGSFPECSARLQYCCCCCYHFTS 100
C CHLG PEC+ ++ C C H S
Sbjct: 163 CSKICHLGPHPECTRMVEIMCHCGKHSKS 191
>sp|Q03751|CSP_DROME Cysteine string protein
Length = 249
Score = 24.6 bits (52), Expect(2) = 5.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 50 CSARLQYCCCCC 85
C A + CCCCC
Sbjct: 114 CCAVITGCCCCC 125
Score = 23.9 bits (50), Expect(2) = 5.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +2
Query: 71 CCCCCYHF 94
CCCCC +F
Sbjct: 126 CCCCCCNF 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,491,199
Number of Sequences: 369166
Number of extensions: 813758
Number of successful extensions: 2266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2253
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)