Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A18
(254 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P01040|CYTA_HUMAN Cystatin A (Stefin A) (Cystatin AS) 33 0.20
sp|Q95150|NT3_CEREL Neurotrophin-3 precursor (NT-3) 30 1.3
sp|P35479|CPI1_PIG Leukocyte cysteine proteinase inhibitor ... 29 2.9
sp|P01041|CYTB_RAT Cystatin B (Liver thiol proteinase inhib... 28 5.0
sp|Q62426|CYTB_MOUSE Cystatin B (Stefin B) 28 6.5
>sp|P01040|CYTA_HUMAN Cystatin A (Stefin A) (Cystatin AS)
Length = 98
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 2 DGKHIHIRVYQPLPGQG-DLALHGLQ-EKLKEDVLEYF 109
D K++H++V++ LPGQ DL L G Q +K K+D L F
Sbjct: 61 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 98
>sp|Q95150|NT3_CEREL Neurotrophin-3 precursor (NT-3)
Length = 154
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 146 RRYNNIFPIIIDQSILEHPPLIFLEVHVMQDPLDQEVVDKREY 18
RRYN+ ++ D LE PPL +EVH+ ++ ++ Y
Sbjct: 93 RRYNSSRFLLSDSIPLESPPLFLIEVHLANPMVNSRSPRRKRY 135
>sp|P35479|CPI1_PIG Leukocyte cysteine proteinase inhibitor 1 (PLCPI) (Stefin D1)
Length = 103
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 11 HIHIRVYQPLPGQGD-LALHGLQ-EKLKEDVLEYF 109
++HIRV+Q LP Q D L L G Q +K K+D L F
Sbjct: 69 YVHIRVFQSLPHQEDPLKLIGYQVDKTKDDELTGF 103
>sp|P01041|CYTB_RAT Cystatin B (Liver thiol proteinase inhibitor) (Stefin B) (Cystatin
beta)
Length = 98
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 8 KHIHIRVYQPLPGQG-DLALHGLQ-EKLKEDVLEYF 109
K +H+RV++PLP + L L Q +K K D L YF
Sbjct: 63 KCVHLRVFEPLPHENKPLTLSSYQTDKEKHDELTYF 98
>sp|Q62426|CYTB_MOUSE Cystatin B (Stefin B)
Length = 98
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 8 KHIHIRVYQPLPGQG-DLALHGLQ-EKLKEDVLEYF 109
K +H+RV+QPLP + L L Q K + D L YF
Sbjct: 63 KCVHLRVFQPLPHENKPLTLSSYQTNKERHDELSYF 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,320,498
Number of Sequences: 369166
Number of extensions: 433879
Number of successful extensions: 879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 68,354,980
effective HSP length: 55
effective length of database: 58,194,555
effective search space used: 1687642095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)