Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A16
(511 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 ... 122 6e-28
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 ... 121 8e-28
sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 ... 120 2e-27
sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (N... 117 2e-26
sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 ... 77 3e-14
sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 ... 75 7e-14
sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C... 75 7e-14
sp|P25293|NAP1_YEAST Nucleosome assembly protein 72 1e-12
sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C... 70 4e-12
sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 64 2e-10
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (Brain
protein DN38)
Length = 391
Score = 122 bits (305), Expect = 6e-28
Identities = 58/102 (56%), Positives = 73/102 (71%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
PF ++GPEI+ GC I W GKNVT+K +KK QK K R RTVTK V NDSFFNFF P
Sbjct: 244 PFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAP 303
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
P +G D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 304 PEVPENG--DLDDDAEAILAADFEIGHFLRERIIPRSVLYFT 343
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP)
Length = 391
Score = 121 bits (304), Expect = 8e-28
Identities = 58/102 (56%), Positives = 72/102 (70%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
PF ++GPEI+ GC I W GKNVT+K +KK QK K R RTVTK V NDSFFNFF P
Sbjct: 244 PFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAP 303
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
P G D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 304 PEVPESG--DLDDDAEAILAADFEIGHFLRERIIPRSVLYFT 343
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 (Nucleosome assembly protein
2) (NAP2)
Length = 375
Score = 120 bits (300), Expect = 2e-27
Identities = 61/102 (59%), Positives = 70/102 (68%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
PF +EGPEIV GC I W GKNVTVK +KK QK K R RT+TK V N+SFFNFF P
Sbjct: 236 PFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNP 295
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
S DGE + + E L SDFE+G + RERI+PRAVLYFT
Sbjct: 296 LKASGDGE-SLDEDSEFTLASDFEIGHFFRERIVPRAVLYFT 336
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 (NAP-1 related protein)
Length = 390
Score = 117 bits (292), Expect = 2e-26
Identities = 56/102 (54%), Positives = 71/102 (69%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
PF ++GPEI+ GC I W GKNVT+K +KK QK K R RTVTK V SFFNFF P
Sbjct: 243 PFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAP 302
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
P +G D+ + E++L +DFE+G ++RERIIPR+VLYFT
Sbjct: 303 PEVPENG--DLDDDXEAILAADFEIGHFLRERIIPRSVLYFT 342
>sp|Q9ULW6|NP1L2_HUMAN Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 76.6 bits (187), Expect = 3e-14
Identities = 43/102 (42%), Positives = 55/102 (53%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
P Y G I + GC I W GKNVT+K +KK QK + RTVT+ DSFFNFF P
Sbjct: 317 PHPYRGTAIEYSTGCEIDWNEGKNVTLKTIKKKQKHRIWGTIRTVTEDFPKDSFFNFFSP 376
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
+ +G D DF +G +R IIPR+VL+F+
Sbjct: 377 HGITSNGRDG---------NDDFLLGHNLRTYIIPRSVLFFS 409
>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 (Brain-specific protein,
X-linked)
Length = 460
Score = 75.5 bits (184), Expect = 7e-14
Identities = 42/102 (41%), Positives = 56/102 (54%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
P Y G I GC+I W GKNVT++ +KK Q+ + RTVT+ DSFFNFF P
Sbjct: 317 PHPYRGTAIEYATGCDIDWNEGKNVTLRTIKKKQRHRVWGTVRTVTEDFPKDSFFNFFSP 376
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
SL+G + DF +G +R IIPR+VL+F+
Sbjct: 377 HGISLNG---------GVENDDFLLGHNLRTYIIPRSVLFFS 409
>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06
Length = 393
Score = 75.5 bits (184), Expect = 7e-14
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 55 GCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPT-ESLDGEDDIP 231
G + W ++TV+ V K Q+ KN + R V V DSFFNFF PPT S + E+
Sbjct: 246 GDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESES 305
Query: 232 SEIESLLESDFEMGQYIRERIIPRAVLYFT 321
E++ LLE D+++G+ +E++IPRAV +FT
Sbjct: 306 PELDELLELDYQIGEDFKEKLIPRAVEWFT 335
>sp|P25293|NAP1_YEAST Nucleosome assembly protein
Length = 417
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = +1
Query: 55 GCNIHWLPGK-NVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPP-TESLDGEDDI 228
GC I W NVTV L + Q+ K + RT+ K+ +SFFNFF+PP ++ D ++++
Sbjct: 271 GCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEEL 330
Query: 229 PSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
++E L D+ +G+ +++++IPRAV +FT
Sbjct: 331 EEDLEERLALDYSIGEQLKDKLIPRAVDWFT 361
>sp|P78920|YB31_SCHPO Putative nucleosome assembly protein C2D10.11C
Length = 379
Score = 69.7 bits (169), Expect = 4e-12
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 55 GCNIHWL-PGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEPPTESLDGEDDIP 231
G I+W+ P KN+TV++ K Q+ + ++ R V V NDSFFNFF PP D DD
Sbjct: 250 GDKINWIKPEKNLTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGL 309
Query: 232 SEIESLLESDFEMGQYIRERIIPRAV 309
+ LLE D+++G+ +++IIP A+
Sbjct: 310 DDKTELLELDYQLGEVFKDQIIPLAI 335
>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3
Length = 506
Score = 63.9 bits (154), Expect = 2e-10
Identities = 38/102 (37%), Positives = 57/102 (55%)
Frame = +1
Query: 16 PFEYEGPEIVRTVGCNIHWLPGKNVTVKLVKKVQKCKNRSEKRTVTKVVKNDSFFNFFEP 195
PF G EI GC I W GK+VTV + + E +VV N SFFNFF P
Sbjct: 388 PFFSWGWEIEDCKGCKIDWRRGKDVTVTTTQS--RTTATGEIEIQPRVVPNASFFNFFSP 445
Query: 196 PTESLDGEDDIPSEIESLLESDFEMGQYIRERIIPRAVLYFT 321
P + G+ + P E +++L+ DFE+GQ + + +I +++ Y+T
Sbjct: 446 PEIPMIGKLE-pre-DAILDEDFEIGQILHDNVILKSIYYYT 485
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,250,451
Number of Sequences: 369166
Number of extensions: 746997
Number of successful extensions: 2151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2141
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)