Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A13
(481 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenas... 186 3e-47
sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenas... 185 5e-47
sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogena... 182 3e-46
sp|Q39769|G3PC_GINBI Glyceraldehyde-3-phosphate dehydrogena... 182 4e-46
sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 181 8e-46
sp|Q96UF1|G3P3_RHIRA Glyceraldehyde-3-phosphate dehydrogena... 181 8e-46
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 181 1e-45
sp|Q9C136|G3P1_RHIRA Glyceraldehyde-3-phosphate dehydrogena... 180 1e-45
sp|Q8NK47|G3P_RHIMI Glyceraldehyde-3-phosphate dehydrogenas... 180 2e-45
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 180 2e-45
>sp|P20287|G3P_SCHMA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Major larval
surface antigen) (P-37)
Length = 338
Score = 186 bits (471), Expect = 3e-47
Identities = 90/124 (72%), Positives = 103/124 (83%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIP LNGK+TGMAFRVP PDVSVVDLTC+L K A Y+EIKAA+K A+ +KG
Sbjct: 214 AAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKG 273
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE+EVVS DF G +SSIFDAKAGI L + FVKLV+WYDNE+GYSCRV+DLI HM
Sbjct: 274 ILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMH 333
Query: 364 TKDH 375
DH
Sbjct: 334 KVDH 337
>sp|P51469|G3P_XENLA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 185 bits (469), Expect = 5e-47
Identities = 91/123 (73%), Positives = 107/123 (86%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIPELNGKITGMAFRVP P+VSVVDLTC+L+K AKYD+IKAAIK ASE MKG
Sbjct: 211 AAKAVGKVIPELNGKITGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKG 270
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YT+++VVS DF GD +SSIFDA AGI L + FVKLV+WYDNE GYS RV+DL+ HM+
Sbjct: 271 ILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMA 330
Query: 364 TKD 372
+K+
Sbjct: 331 SKE 333
>sp|P26519|G3PC_PETCR Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 336
Score = 182 bits (463), Expect = 3e-46
Identities = 90/121 (74%), Positives = 105/121 (86%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKV+P LNGK+TGMAFRVP DVSVVDLT +L+KAA YDEIKAAIKH SET++KG
Sbjct: 214 AAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKG 273
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE++VVS DF GD SSIFDAKAGI L FVK+V+WYDNE+GYS RVIDLI+HM+
Sbjct: 274 ILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333
Query: 364 T 366
+
Sbjct: 334 S 334
>sp|Q39769|G3PC_GINBI Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Length = 340
Score = 182 bits (461), Expect = 4e-46
Identities = 90/121 (74%), Positives = 104/121 (85%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKV+P LNGK+TGMAFRVP PDVSVVDLT +L+K A YDEIKAAIK SE +KG
Sbjct: 218 AAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKG 277
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE++VVS DF GD+ SSIFDAKAGI L+D FVKLV+WYDNE+GYS RVIDLI HM+
Sbjct: 278 ILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
Query: 364 T 366
+
Sbjct: 338 S 338
>sp|P00354|G3P1_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 334
Score = 181 bits (459), Expect = 8e-46
Identities = 86/123 (69%), Positives = 107/123 (86%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIPEL+GK+TGMAFRVP +VSV+DLTC+L+K AKYD+IK +K ASE +KG
Sbjct: 212 AAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKG 271
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE+EVVS DF G ++SSIFDA AGI+L DTFVKLV+WYDNE+GYS RV+DL+ HM+
Sbjct: 272 ILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHMA 331
Query: 364 TKD 372
+K+
Sbjct: 332 SKE 334
>sp|Q96UF1|G3P3_RHIRA Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH 3)
Length = 339
Score = 181 bits (459), Expect = 8e-46
Identities = 90/124 (72%), Positives = 108/124 (87%), Gaps = 1/124 (0%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETT-MK 180
AA+AVGKVIPELNGK+TGMAFRVP PDVSVVDLT +L+K A YDEIKA IK ASE+ +K
Sbjct: 213 AAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELK 272
Query: 181 GILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHM 360
GIL YTE++VVS DF GD +SSIFDAKAGIQL+ TFVKL++WYDNE+GYS RV+DL+ ++
Sbjct: 273 GILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYV 332
Query: 361 STKD 372
+ KD
Sbjct: 333 AGKD 336
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 181 bits (458), Expect = 1e-45
Identities = 87/123 (70%), Positives = 106/123 (86%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+IK +K A++ +KG
Sbjct: 211 AAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKG 270
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
ILAYTE++VVS DF GD +SS FDA AGI L D FVKLV+WYDNEYGYS RV+DL+ HM+
Sbjct: 271 ILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMA 330
Query: 364 TKD 372
+K+
Sbjct: 331 SKE 333
>sp|Q9C136|G3P1_RHIRA Glyceraldehyde-3-phosphate dehydrogenase 1 (GAPDH 1)
Length = 337
Score = 180 bits (457), Expect = 1e-45
Identities = 90/123 (73%), Positives = 100/123 (81%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIP LNGK+TGMAFRVP PDVSVVDLT L K A YDEIK AIK ASETTMKG
Sbjct: 212 AAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVNLSKGASYDEIKQAIKKASETTMKG 271
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
+L YT + VVS DF G+ SS+FDA AGIQLT TFVKL+AWYDNEYGYS RV+DL+ H +
Sbjct: 272 VLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAA 331
Query: 364 TKD 372
D
Sbjct: 332 KVD 334
>sp|Q8NK47|G3P_RHIMI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 336
Score = 180 bits (456), Expect = 2e-45
Identities = 88/123 (71%), Positives = 105/123 (85%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIP LNGK+TGMAFRVP PDVSVVDLT +L+K+A Y++IKAAIK ASE ++KG
Sbjct: 211 AAKAVGKVIPHLNGKLTGMAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKG 270
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE+EVVS DF GD +SSIFDAKAGI L FVKL++WYDNEYGYS RV+DL+ H++
Sbjct: 271 ILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIA 330
Query: 364 TKD 372
D
Sbjct: 331 KVD 333
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 180 bits (456), Expect = 2e-45
Identities = 86/123 (69%), Positives = 105/123 (85%)
Frame = +1
Query: 4 AAQAVGKVIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEIKAAIKHASETTMKG 183
AA+AVGKVIPELNGK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+IK +K ASE +KG
Sbjct: 211 AAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKG 270
Query: 184 ILAYTEEEVVSQDFKGDHNSSIFDAKAGIQLTDTFVKLVAWYDNEYGYSCRVIDLIQHMS 363
IL YTE++VVS DF D +SS FDA AGI L D FVKL++WYDNE+GYS RV+DL+ HM+
Sbjct: 271 ILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 330
Query: 364 TKD 372
+K+
Sbjct: 331 SKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,022,397
Number of Sequences: 369166
Number of extensions: 921142
Number of successful extensions: 2574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2503
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)