Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A09
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 214 5e-56
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 214 5e-56
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 214 5e-56
sp|P02554|TBB_PIG Tubulin beta chain 214 5e-56
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 214 5e-56
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 214 5e-56
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 214 5e-56
sp|P02556|TBB_LYTPI Tubulin beta chain (Beta tubulin) 214 5e-56
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 214 5e-56
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 213 1e-55
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 172 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 231
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 232 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 275
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P02556|TBB_LYTPI Tubulin beta chain (Beta tubulin)
Length = 177
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 58 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 117
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 118 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 161
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 214 bits (545), Expect = 5e-56
Identities = 102/104 (98%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATFIGNSTAIQELFKR+SEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 213 bits (542), Expect = 1e-55
Identities = 101/104 (97%), Positives = 104/104 (100%)
Frame = +1
Query: 1 DEQMLNVQNKNSSYFVEWIPNNIKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFT 180
DEQMLNVQNKNSSYFVEWIPNN+KTAVCDIPPRGLKMSATF+GNSTAIQELF+RVSEQFT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFRRVSEQFT 386
Query: 181 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 312
AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 387 AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,125,804
Number of Sequences: 369166
Number of extensions: 682807
Number of successful extensions: 2148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)