Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_P14
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 129 2e-30
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 128 5e-30
sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-... 128 5e-30
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 128 5e-30
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 127 6e-30
sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-su... 125 2e-29
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 125 3e-29
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 125 3e-29
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 125 4e-29
sp|Q69BJ6|UCRI_HYLSY Ubiquinol-cytochrome c reductase iron-... 125 4e-29
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 129 bits (325), Expect = 2e-30
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F++
Sbjct: 208 PEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLS 267
Query: 182 DKTVVVG 202
D VVVG
Sbjct: 268 DDMVVVG 274
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 128 bits (321), Expect = 5e-30
Identities = 52/67 (77%), Positives = 60/67 (89%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTS 267
Query: 182 DKTVVVG 202
D V+VG
Sbjct: 268 DDMVIVG 274
>sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 128 bits (321), Expect = 5e-30
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPAYEFTS 267
Query: 182 DKTVVVG 202
D VVVG
Sbjct: 268 DDVVVVG 274
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 128 bits (321), Expect = 5e-30
Identities = 52/67 (77%), Positives = 60/67 (89%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +
Sbjct: 208 PEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTS 267
Query: 182 DKTVVVG 202
D V+VG
Sbjct: 268 DDLVIVG 274
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 127 bits (320), Expect = 6e-30
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 208 PEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTG 267
Query: 182 DKTVVVG 202
D V+VG
Sbjct: 268 DDMVIVG 274
>sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) (Liver
regeneration-related protein LRRGT00195)
Length = 274
Score = 125 bits (315), Expect = 2e-29
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTS 267
Query: 182 DKTVVVG 202
VVVG
Sbjct: 268 GDVVVVG 274
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 125 bits (314), Expect = 3e-29
Identities = 52/67 (77%), Positives = 59/67 (88%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTS 267
Query: 182 DKTVVVG 202
D VVVG
Sbjct: 268 DDMVVVG 274
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 125 bits (314), Expect = 3e-29
Identities = 52/67 (77%), Positives = 58/67 (86%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTG 267
Query: 182 DKTVVVG 202
D VVVG
Sbjct: 268 DDVVVVG 274
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 125 bits (313), Expect = 4e-29
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTS 267
Query: 182 DKTVVVG 202
D V+VG
Sbjct: 268 DDMVIVG 274
>sp|Q69BJ6|UCRI_HYLSY Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 125 bits (313), Expect = 4e-29
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = +2
Query: 2 PEWLILIGICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFIN 181
PEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +
Sbjct: 208 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTS 267
Query: 182 DKTVVVG 202
D V+VG
Sbjct: 268 DDMVIVG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,207,884
Number of Sequences: 369166
Number of extensions: 658120
Number of successful extensions: 1751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)