Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_P12
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964R1|CP6J1_BLAGE Cytochrome P450 6j1 (CYPVIJ1) 30 2.2
sp|O13798|CID16_SCHPO Caffeine-induced protein 16 28 5.0
>sp|Q964R1|CP6J1_BLAGE Cytochrome P450 6j1 (CYPVIJ1)
Length = 501
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +1
Query: 40 PMCLIYFLNFSHFNKFFWKIFGFSPSPGSPHFRNLEERTLAKKRI 174
P+CL FL HFN FWK G P F NL++ L KK I
Sbjct: 19 PICLYLFLT-RHFN--FWKKRGVIYVRPLPFFGNLKDVLLQKKYI 60
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16
Length = 1202
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 248 HATSETGTKSRKNKCYIYKYKYSVDIRFFAKVRSSKLRKCGEPGLGEKPNIFQKNLL 78
H S T SRK +I YK I + V+ +KL+ E + N+F KNL+
Sbjct: 739 HTVSSASTSSRK---FIENYKSLESIGLTSFVKDNKLKASKELQKLIEENVFPKNLI 792
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,878,970
Number of Sequences: 369166
Number of extensions: 562535
Number of successful extensions: 1177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)