Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_P10
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27701|CD82_HUMAN CD82 antigen (Inducible membrane prote... 30 2.3
sp|O43657|TSN6_HUMAN Tetraspanin-6 (Tspan-6) (Transmembrane... 28 6.6
sp|O70401|TSN6_MOUSE Tetraspanin-6 (Tspan-6) (Transmembrane... 28 6.6
sp|P11710|FUS1_YEAST Nuclear fusion protein FUS1 28 8.6
>sp|P27701|CD82_HUMAN CD82 antigen (Inducible membrane protein R2) (C33 antigen) (IA4)
(Metastasis suppressor Kangai 1) (Suppressor of
tumorigenicity-6) (Tetraspanin-27) (Tspan-27)
Length = 267
Score = 29.6 bits (65), Expect = 2.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 9 LVIGITLGIAFFEIFVVVCAFCLCRN 86
+++G+ +G+A E+ +V + CLCR+
Sbjct: 230 IILGVGVGVAIIELLGMVLSICLCRH 255
>sp|O43657|TSN6_HUMAN Tetraspanin-6 (Tspan-6) (Transmembrane 4 superfamily member 6)
(T245 protein) (Tetraspanin TM4-D) (A15 homolog)
Length = 245
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 9 LVIGITLGIAFFEIFVVVCAFCLCRNTVQHQ 101
+V GI+ G+A F++ + A+CL R +Q
Sbjct: 211 VVAGISFGVACFQLIGIFLAYCLSRAITNNQ 241
>sp|O70401|TSN6_MOUSE Tetraspanin-6 (Tspan-6) (Transmembrane 4 superfamily member 6)
Length = 245
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 9 LVIGITLGIAFFEIFVVVCAFCLCRNTVQHQ 101
+V GI+ G+A F++ + A+CL R +Q
Sbjct: 211 VVAGISFGVACFQLIGIFLAYCLSRAITNNQ 241
>sp|P11710|FUS1_YEAST Nuclear fusion protein FUS1
Length = 512
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 9 LVIGITLGIAFFEIFVVVCAFCLCRNTV 92
L IG+ +GI F + +++C F L RN+V
Sbjct: 74 LSIGLPIGIFCFGLLILLCYFYLKRNSV 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,545,233
Number of Sequences: 369166
Number of extensions: 339388
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)