Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_P05
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 332 6e-91
sp|P49154|RS2_URECA 40S ribosomal protein S2 321 2e-87
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 316 5e-86
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 314 2e-85
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 314 2e-85
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 312 8e-85
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 306 4e-83
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 305 1e-82
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 298 9e-81
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 288 9e-78
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 332 bits (852), Expect = 6e-91
Identities = 163/212 (76%), Positives = 182/212 (85%), Gaps = 1/212 (0%)
Frame = +3
Query: 114 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQ 290
++DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQ
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96
Query: 291 KQTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNK 470
KQTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 471 LGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATL 650
+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T TL
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216
Query: 651 ENFAKATYMAIRRTYEYLSPDLWNATPKHTKP 746
NFAKATY AI +TY YL+PDLW P + P
Sbjct: 217 GNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 321 bits (822), Expect = 2e-87
Identities = 161/202 (79%), Positives = 174/202 (86%), Gaps = 1/202 (0%)
Frame = +3
Query: 126 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 302
KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44 KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
Query: 303 AGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 482
AGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163
Query: 483 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFA 662
HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQTATL NFA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223
Query: 663 KATYMAIRRTYEYLSPDLWNAT 728
KATY AI TY YL+PDLW T
Sbjct: 224 KATYAAIAATYSYLTPDLWRET 245
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 316 bits (809), Expect = 5e-86
Identities = 158/204 (77%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 296
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 297 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 476
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 477 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 656
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 657 FAKATYMAIRRTYEYLSPDLWNAT 728
FAKAT+ AI +TY YL+PDLW T
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKET 244
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 314 bits (805), Expect = 2e-85
Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 296
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 297 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 476
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 477 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 656
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 657 FAKATYMAIRRTYEYLSPDLWNAT 728
FAKAT+ AI +TY YL+PDLW T
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKET 259
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 314 bits (804), Expect = 2e-85
Identities = 156/204 (76%), Positives = 174/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 296
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 297 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 476
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 477 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 656
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 657 FAKATYMAIRRTYEYLSPDLWNAT 728
FAKAT+ AI +TY YL+PDLW T
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKET 259
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 312 bits (799), Expect = 8e-85
Identities = 155/204 (75%), Positives = 173/204 (84%), Gaps = 1/204 (0%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 296
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 49 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108
Query: 297 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 476
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168
Query: 477 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 656
HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228
Query: 657 FAKATYMAIRRTYEYLSPDLWNAT 728
FAKAT+ AI +TY YL+PDLW T
Sbjct: 229 FAKATFDAISKTYSYLTPDLWKET 252
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 306 bits (784), Expect = 4e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +3
Query: 138 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 314
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 315 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 494
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 495 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 674
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 675 MAIRRTYEYLSPDLWNAT 728
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 305 bits (781), Expect = 1e-82
Identities = 153/211 (72%), Positives = 170/211 (80%)
Frame = +3
Query: 114 EKDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQK 293
EK++ EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQK
Sbjct: 52 EKET-EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQK 110
Query: 294 QTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 473
QT AGQRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGNK+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170
Query: 474 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLE 653
G HTVPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TATL
Sbjct: 171 GLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLG 230
Query: 654 NFAKATYMAIRRTYEYLSPDLWNATPKHTKP 746
NFAKATY A++RTY YL+PDLW P
Sbjct: 231 NFAKATYAALQRTYSYLTPDLWKEEALEKSP 261
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 298 bits (764), Expect = 9e-81
Identities = 139/210 (66%), Positives = 168/210 (80%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 299
+ KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89
Query: 300 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 479
RAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYWG LGD
Sbjct: 90 RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149
Query: 480 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 659
HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T TL NF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
Query: 660 AKATYMAIRRTYEYLSPDLWNATPKHTKPI 749
KA + A TY L+P+LW P PI
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPI 239
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 288 bits (738), Expect = 9e-78
Identities = 142/200 (71%), Positives = 164/200 (82%)
Frame = +3
Query: 120 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 299
++K W P TKLGRLV G V+ + EIY++S+PIKE +IID FL LKDEV+ I PVQKQT
Sbjct: 45 ETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFL-NLKDEVMKIVPVQKQT 103
Query: 300 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 479
RAGQRTRFKA V +GD+NGHVGLGVKCAKEVATAI GAI AKLSVIPVR+GYWGNKLG
Sbjct: 104 RAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGA 163
Query: 480 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 659
HTVP KVTGKCGSV+VRL+PAPRGTGIV A V KKLL AG+ DVYTS+ G+T T+ NF
Sbjct: 164 PHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNF 223
Query: 660 AKATYMAIRRTYEYLSPDLW 719
AT+ AI +T+ YL+PDLW
Sbjct: 224 VMATFFAITKTFAYLTPDLW 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,656,523
Number of Sequences: 369166
Number of extensions: 1714971
Number of successful extensions: 4581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4424
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)