Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O18
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 417 e-116
sp|O61998|HSP90_BRUPA Heat shock protein 90 415 e-116
sp|O57521|HS90B_BRARE Heat shock protein HSP 90-beta 415 e-116
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 412 e-115
sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86) 412 e-115
sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha 411 e-114
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 410 e-114
sp|Q9GKX7|HS90A_HORSE Heat shock protein HSP 90-alpha (HSP 86) 410 e-114
sp|P34058|HS90B_RAT Heat shock protein HSP 90-beta (HSP 84) 408 e-114
sp|Q04619|HS90B_CHICK Heat shock cognate protein HSP 90-beta 407 e-113
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 417 bits (1073), Expect = e-116
Identities = 207/275 (75%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RA FDLFENKKKRNNIKLYVRRVFIMDNCE+LIPEYLNF+KGVVDSEDLPLNIS
Sbjct: 334 LLFVPRRAAFDLFENKKKRNNIKLYVRRVFIMDNCEELIPEYLNFIKGVVDSEDLPLNIS 393
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC++LF E+ EDKDNYKK+YEQFSKNIKLGIHEDS NR K+
Sbjct: 394 REMLQQSKILKVIRKNLVKKCLDLFTELAEDKDNYKKYYEQFSKNIKLGIHEDSQNRKKL 453
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
++ LRYY+++SGDEM SLKDYVSRMK+ QK IYYITGE+KD V +SAFVERL K G EV+
Sbjct: 454 SDLLRYYTSASGDEMVSLKDYVSRMKDTQKHIYYITGETKDQVANSAFVERLRKAGLEVI 513
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKEYDGK LV VT LCK+MKDIL
Sbjct: 514 YMIEPIDEYCVQQLKEYDGKNLVSVTKEGLELPEDEEEKKKQDELKAKYENLCKIMKDIL 573
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
DKK+EKVTVSNRLVSSPCCIVTS YGW+ANMERIM
Sbjct: 574 DKKIEKVTVSNRLVSSPCCIVTSTYGWTANMERIM 608
>sp|O61998|HSP90_BRUPA Heat shock protein 90
Length = 717
Score = 415 bits (1066), Expect = e-116
Identities = 206/275 (74%), Positives = 232/275 (84%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFENKK +N IKLYVRRVFIM+NC++L+PEYLNF+KGVVDSEDLPLNIS
Sbjct: 322 LLFVPQRAPFDLFENKKTKNAIKLYVRRVFIMENCDELMPEYLNFIKGVVDSEDLPLNIS 381
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF+EI EDKDN+KKFYEQFSKNIKLGIHEDS NR K+
Sbjct: 382 REMLQQSKILKVIRKNLVKKCLELFDEIAEDKDNFKKFYEQFSKNIKLGIHEDSTNRKKL 441
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+EFLR+Y+++S +EM SLKDYVSRMKENQK IY+ITGES++ V SAFVER+ +RGFEV+
Sbjct: 442 SEFLRFYTSASSEEMTSLKDYVSRMKENQKQIYFITGESREAVASSAFVERVKRRGFEVI 501
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M DPIDEY VQQLKEYDGKKLV VT LCKVMKDIL
Sbjct: 502 YMTDPIDEYCVQQLKEYDGKKLVSVTKEGLELPESEEEKKKFEEDKVKFENLCKVMKDIL 561
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLVSSPCCIVTS+YGWSANMERIM
Sbjct: 562 EKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIM 596
>sp|O57521|HS90B_BRARE Heat shock protein HSP 90-beta
Length = 725
Score = 415 bits (1066), Expect = e-116
Identities = 206/275 (74%), Positives = 228/275 (82%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFENKKK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 331 LLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNIS 390
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKN+VKKC+ELF E+ EDKDNYKKFY+ FSKN+KLGIHED NR K+
Sbjct: 391 REMLQQSKILKVIRKNIVKKCLELFAELAEDKDNYKKFYDAFSKNLKLGIHEDCQNRKKL 450
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRY S+ SGDEM SL +YVSRMKENQK IYYITGESKD V HSAFVER+ KRGFEVL
Sbjct: 451 SELLRYQSSQSGDEMTSLTEYVSRMKENQKSIYYITGESKDQVAHSAFVERVCKRGFEVL 510
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M +PIDEY VQQLK++DGK LV VT LCK+MK+IL
Sbjct: 511 YMTEPIDEYCVQQLKDFDGKSLVSVTKEGLELPEDEDEKKKMEEDKAKFENLCKLMKEIL 570
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
DKKVEKVTVSNRLVSSPCCIVTS YGW+ANMERIM
Sbjct: 571 DKKVEKVTVSNRLVSSPCCIVTSTYGWTANMERIM 605
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 412 bits (1059), Expect = e-115
Identities = 203/275 (73%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFEN+KK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 340 LLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNIS 399
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF E+ EDK+NYKKFYEQFSKNIKLGIHEDS NR K+
Sbjct: 400 REMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKL 459
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRYY+++SGDEM SLKDY +RMKENQK IYYITGE+KD V +SAFVERL K G EV+
Sbjct: 460 SELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVI 519
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKE++GK LV VT LCK+MKDIL
Sbjct: 520 YMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL 579
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIM
Sbjct: 580 EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 614
>sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 412 bits (1059), Expect = e-115
Identities = 203/275 (73%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFEN+KK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 341 LLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNIS 400
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF E+ EDK+NYKKFYEQFSKNIKLGIHEDS NR K+
Sbjct: 401 REMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKL 460
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRYY+++SGDEM SLKDY +RMKENQK IYYITGE+KD V +SAFVERL K G EV+
Sbjct: 461 SELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVI 520
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKE++GK LV VT LCK+MKDIL
Sbjct: 521 YMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL 580
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIM
Sbjct: 581 EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 615
>sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha
Length = 728
Score = 411 bits (1056), Expect = e-114
Identities = 202/275 (73%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFEN+KK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 336 LLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFMRGVVDSEDLPLNIS 395
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF E+ EDK+NYKKFYEQFSKNIKLGIHEDS NR K+
Sbjct: 396 REMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKL 455
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRYY+++SGDEM SLKDY +RMKENQK +YYITGE+KD V +SAFVERL K G EV+
Sbjct: 456 SELLRYYTSASGDEMVSLKDYCTRMKENQKHVYYITGETKDQVANSAFVERLRKHGLEVI 515
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKE++GK LV VT LCK+MKDIL
Sbjct: 516 YMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKAKFENLCKIMKDIL 575
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIM
Sbjct: 576 EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 610
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 410 bits (1055), Expect = e-114
Identities = 202/275 (73%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFEN+KK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 341 LLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNIS 400
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF E+ EDK+NYKKFYEQFSKNIKLGIHEDS NR K+
Sbjct: 401 REMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKL 460
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRYY+++SGDEM SLKDY +RMKENQK IY+ITGE+KD V +SAFVERL K G EV+
Sbjct: 461 SELLRYYTSASGDEMVSLKDYCTRMKENQKHIYFITGETKDQVANSAFVERLRKHGLEVI 520
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKE++GK LV VT LCK+MKDIL
Sbjct: 521 YMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL 580
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIM
Sbjct: 581 EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 615
>sp|Q9GKX7|HS90A_HORSE Heat shock protein HSP 90-alpha (HSP 86)
Length = 719
Score = 410 bits (1053), Expect = e-114
Identities = 202/275 (73%), Positives = 229/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFEN+KK+NNIKLYVRRVFIMDNCE+LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 330 LLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNIS 389
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKNLVKKC+ELF E+ EDK+NYKKFYEQ SKNIKLGIHEDS NR K+
Sbjct: 390 REMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQLSKNIKLGIHEDSQNRKKL 449
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRYY+++SGDEM SLKDY +RMKENQK IYYITGE+KD V +SAFVERL K G EV+
Sbjct: 450 SELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVI 509
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M++PIDEY VQQLKE++GK LV VT LCK+MKDIL
Sbjct: 510 YMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDIL 569
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIM
Sbjct: 570 EKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 604
>sp|P34058|HS90B_RAT Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 408 bits (1049), Expect = e-114
Identities = 200/275 (72%), Positives = 229/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFENKKK+NNIKLYVRRVFIMD+C+DLIPEYLNF++GVVDSEDLPLNIS
Sbjct: 332 LLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDDLIPEYLNFIRGVVDSEDLPLNIS 391
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKN+VKKC+ELF E+ EDK+NYKKFYE FSKN+KLGIHEDS NR ++
Sbjct: 392 REMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRL 451
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRY+++ SGDEM SL +YVSRMKE QK IYYITGESK+ V +SAFVER+ KRGFEV+
Sbjct: 452 SELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVV 511
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M +PIDEY VQQLKE+DGK LV VT LCK+MK+IL
Sbjct: 512 YMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKARFENLCKLMKEIL 571
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
DKKVEKVT+SNRLVSSPCCIVTS YGW+ANMERIM
Sbjct: 572 DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIM 606
>sp|Q04619|HS90B_CHICK Heat shock cognate protein HSP 90-beta
Length = 725
Score = 407 bits (1045), Expect = e-113
Identities = 199/275 (72%), Positives = 230/275 (83%)
Frame = +3
Query: 3 LLFCPKRAPFDLFENKKKRNNIKLYVRRVFIMDNCEDLIPEYLNFVKGVVDSEDLPLNIS 182
LLF P+RAPFDLFENKKK+NNIKLYVRRVFIMD+C++LIPEYLNF++GVVDSEDLPLNIS
Sbjct: 333 LLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNIS 392
Query: 183 REMLQQNKILKVIRKNLVKKCIELFEEIMEDKDNYKKFYEQFSKNIKLGIHEDSVNRNKI 362
REMLQQ+KILKVIRKN+VKKC+ELF E+ EDK+NYKKFYE FSKN+KLGIHEDS NR ++
Sbjct: 393 REMLQQSKILKVIRKNIVKKCLELFTELAEDKENYKKFYEAFSKNLKLGIHEDSTNRKRL 452
Query: 363 AEFLRYYSTSSGDEMCSLKDYVSRMKENQKDIYYITGESKDNVNHSAFVERLTKRGFEVL 542
+E LRY+++ SGDEM SL +YVSRMKE+QK IYYITGESK+ V +SAFVER+ KRGFEV+
Sbjct: 453 SELLRYHTSQSGDEMTSLSEYVSRMKESQKSIYYITGESKEQVANSAFVERVRKRGFEVV 512
Query: 543 LMVDPIDEYSVQQLKEYDGKKLVCVTXXXXXXXXXXXXXXXXXXXXXXXXPLCKVMKDIL 722
M +PIDEY VQQLKE+DGK LV VT LCK+MK+IL
Sbjct: 513 YMTEPIDEYCVQQLKEFDGKTLVSVTKEGLELPEDEEEKKNMEESKAKFETLCKLMKEIL 572
Query: 723 DKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIM 827
DKKVEKVT+SNRLVSSPCCIVTS YGW+ANMERIM
Sbjct: 573 DKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIM 607
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,319,107
Number of Sequences: 369166
Number of extensions: 1312387
Number of successful extensions: 5221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)