Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O14
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chrom... 46 2e-05
sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-... 33 0.17
sp|Q26366|VG_DROME Vestigial protein 31 0.82
sp|Q15782|CH3L2_HUMAN Chitinase 3-like protein 2 precursor ... 30 1.4
sp|Q99N32|KLOTB_MOUSE Beta klotho (BetaKlotho) (Klotho beta... 30 1.8
sp|Q00911|EGR4_RAT Early growth response protein 4 (EGR-4) ... 30 2.4
sp|Q86Z14|KLOTB_HUMAN Beta klotho (BetaKlotho) (Klotho beta... 30 2.4
sp|Q9WUF2|EGR4_MOUSE Early growth response protein 4 (EGR-4) 30 2.4
sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor ... 29 3.1
sp|Q01055|V120_SHV21 Capsid assembly protein 63 29 3.1
>sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chromosome III
Length = 210
Score = 46.2 bits (108), Expect = 2e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 40 FYQSVNCKKKSVNYKLVVIL-SIFGGMFGLDRFXXXXXXXXXXXXXSCGGMGFWHLMDII 216
F +S C + +Y L +L SIF G+ +DRF + GG G W ++DI
Sbjct: 132 FTKSTPCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVGKLMTLGGFGIWWIVDIF 191
Query: 217 LISLQMLGPSDGSYYQTF 270
L+ L +LGP+D S ++ +
Sbjct: 192 LLVLGVLGPADDSSWEPY 209
>sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3 (G-protein linked
acetylcholine receptor 3)
Length = 611
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Frame = +2
Query: 179 VEGWDSGIS----WTLFSFLCRCSVLLTDLTI---------RPLRSPPDRSTMKPFTSTT 319
++ WD G + W +L + +L L I RPL P R+T K T
Sbjct: 128 IQKWDLGYTMCQFWLCIDYLMSNASVLNLLLISFDRYFSVTRPLSYRPRRTTKKALTMIA 187
Query: 320 CEYTCVCVCGPPW 358
C Y + PPW
Sbjct: 188 CTYIISLILWPPW 200
>sp|Q26366|VG_DROME Vestigial protein
Length = 453
Score = 31.2 bits (69), Expect = 0.82
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 348 PHTHTHVYSQVVEVKGFIVERSGGDLKGLIVRSVRRTEHLQRNENNVHEMPES 190
PH+HTH ++ + + IV RS + R V +H NE++ P+S
Sbjct: 168 PHSHTHTHTHQTKEEDLIVPRSEAE-----ARLVGSQQHQHHNESSCSSGPDS 215
>sp|Q15782|CH3L2_HUMAN Chitinase 3-like protein 2 precursor (YKL-39) (Chondrocyte protein
39)
Length = 390
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 22 DGSEIGFYQSVNCKKKSVNYKLVVILSIFGGMFGLDRF 135
D SE+ YQ++N K+ N KL ++LSI G +FG F
Sbjct: 75 DKSEVMLYQTIN-SLKTKNPKLKILLSIGGYLFGSKGF 111
>sp|Q99N32|KLOTB_MOUSE Beta klotho (BetaKlotho) (Klotho beta-like protein)
Length = 1043
Score = 30.0 bits (66), Expect = 1.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 399 RRVAIYTITDDKSVQGGPHTHTHVYSQVVEVKGFIVERSGGDLKG 265
RR Y + + + P + H Y Q+++ GF ++ S D+KG
Sbjct: 473 RRGLFYVDFNSEQKERKPKSSAHYYKQIIQDNGFPLKESTPDMKG 517
>sp|Q00911|EGR4_RAT Early growth response protein 4 (EGR-4) (Early response protein
NGFI-C) (Nerve growth factor-induced protein C) (NGFI-C)
Length = 478
Score = 29.6 bits (65), Expect = 2.4
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 406 KCKTCGYLHNYR*QISPGRTAHTHTRVLTSRRSKRFHC*AIWRRSQRSD-----SKIRQK 242
+C+ C L N+ R+ H T V T K F C RR RSD SK+ K
Sbjct: 403 QCRIC--LRNF------SRSDHLTTHVRTHTGEKPFACDVCGRRFARSDEKKRHSKVHLK 454
Query: 241 DRASAEK 221
+A AE+
Sbjct: 455 QKARAEE 461
>sp|Q86Z14|KLOTB_HUMAN Beta klotho (BetaKlotho) (Klotho beta-like protein)
Length = 1044
Score = 29.6 bits (65), Expect = 2.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 399 RRVAIYTITDDKSVQGGPHTHTHVYSQVVEVKGFIVERSGGDLKG 265
RR Y + K + P + H Y Q++ GF ++ S D++G
Sbjct: 475 RRGLFYVDFNSKQKERKPKSSAHYYKQIIRENGFSLKESTPDVQG 519
>sp|Q9WUF2|EGR4_MOUSE Early growth response protein 4 (EGR-4)
Length = 478
Score = 29.6 bits (65), Expect = 2.4
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 406 KCKTCGYLHNYR*QISPGRTAHTHTRVLTSRRSKRFHC*AIWRRSQRSD-----SKIRQK 242
+C+ C L N+ R+ H T V T K F C RR RSD SK+ K
Sbjct: 403 QCRIC--LRNF------SRSDHLTTHVRTHTGEKPFACDVCGRRFARSDEKKRHSKVHLK 454
Query: 241 DRASAEK 221
+A AE+
Sbjct: 455 QKARAEE 461
>sp|Q8BJ66|KAZD1_MOUSE Kazal-type serine protease inhibitor domain 1 precursor
(IGFBP-related protein 10) (IGFBP-rP10) (Bone and
odontoblast-expressed protein 1)
Length = 313
Score = 29.3 bits (64), Expect = 3.1
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 QIGSNLVNIWRNVWIRSILFGLSCFRSPEAAVVWR-DGI 194
QI S NIW NV + ++FG F P A++ WR DG+
Sbjct: 180 QILSQPHNIW-NVTGQDVIFGCEVFAYPMASIEWRKDGL 217
>sp|Q01055|V120_SHV21 Capsid assembly protein 63
Length = 899
Score = 29.3 bits (64), Expect = 3.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 157 LKQDNPNKIDLIQTFLQILTRLLPICNLHSSSYNSLIDKILFQIHQ 20
+K NPN I L TFLQ + I NL ++S++ + + QI +
Sbjct: 737 IKVSNPNFIKLNNTFLQCFKKYNTIANLITNSHSFNLTRYFRQIFE 782
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,044,739
Number of Sequences: 369166
Number of extensions: 826129
Number of successful extensions: 2746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)