Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O05
(341 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1) 33 0.20
sp|Q9ZB11|GALR_STRTR HTH-type transcriptional regulator gal... 32 0.46
sp|P56946|CPHB_SYNY8 Cyanophycinase 30 1.3
sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3 30 1.3
sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protei... 30 1.3
sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1 29 3.0
sp|Q04749|YMV8_YEAST Hypothetical 47.1 kDa protein in NCA1-... 28 6.6
sp|P10105|LAB_DROME Homeotic labial protein (F24) (F90-2) 28 8.6
>sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1)
Length = 71
Score = 33.1 bits (74), Expect = 0.20
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 130 CGGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCS 285
CG GCN ++ + GL + T TI ++ + + S HP + C C S
Sbjct: 12 CGSGCNCKNPVLGLSEKTTSKTIVADVAPVKS-HPEGSEMSVEGGHGCKCGS 62
>sp|Q9ZB11|GALR_STRTR HTH-type transcriptional regulator galR (Galactose operon
repressor)
Length = 331
Score = 32.0 bits (71), Expect = 0.46
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 22 AAIERCKVKNVKVNQITLANGDPCKLID-GNFIQKTVC---GGGCNARSSIRGLEQITNP 189
A +ER K V V+ TL G PC D N +Q +C GCN + G E+ T+
Sbjct: 128 AKLERLKKTLVFVDSDTLNQGHPCVTTDFENSVQSALCYLKEQGCNNIGLLIGQEKTTDA 187
Query: 190 LTIFSE 207
I S+
Sbjct: 188 TEIISD 193
>sp|P56946|CPHB_SYNY8 Cyanophycinase
Length = 272
Score = 30.4 bits (67), Expect = 1.3
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Frame = +1
Query: 19 TAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCGGGCNARSSIRGLEQITNPLTI 198
T +ER + + VK+ ++TL + G+ + GG + S R L + L I
Sbjct: 111 TPLMERIR-QRVKLGEVTLGGTSAGAAVMGHHM----IAGGSSGESPNRALVDMAMGLGI 165
Query: 199 FSEYS---------------KLLSNHPSRLPVGFMQDSACSCCSPDQY 297
E LSNHP RL +G +D+ C+ D+Y
Sbjct: 166 IPEVIVDQHFHNRNRMARLLSALSNHPERLGIGIDEDT-CAVFQKDEY 212
>sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3
Length = 2796
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 1 DYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCGGGCNARSSIRGLEQI 180
++ C Y+ ++ K N+ LA GD K+ DG KT G +S+RGL
Sbjct: 423 NHECIYSLQVQAGKGINISARTFHLAQGDVLKIYDGK--DKTTHLLGAFTGASMRGLTLS 480
Query: 181 TNPLTIFSEYS 213
+ ++ E++
Sbjct: 481 STSNQLWLEFN 491
>sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protein 3 precursor
Length = 3670
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 1 DYRCCYTAAIERCKVKNVKVNQITLANGDPCKLIDGNFIQKTVCGGGCNARSSIRGLEQI 180
++ C Y+ ++ K N+ LA GD K+ DG KT G +S+RGL
Sbjct: 1227 NHECIYSIQVQAGKGINISARTFHLAQGDVLKIYDGK--DKTTHLLGAFTGASMRGLTLS 1284
Query: 181 TNPLTIFSEYS 213
+ ++ E++
Sbjct: 1285 STSNQLWLEFN 1295
>sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1
Length = 893
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 178 ITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCSP 288
+ PL++ + + LL H LPVG Q A SC P
Sbjct: 643 LLQPLSVLTFHLDLLFEHHHHLPVGLQQAPAPSCPPP 679
>sp|Q04749|YMV8_YEAST Hypothetical 47.1 kDa protein in NCA1-HMS1 intergenic region
Length = 426
Score = 28.1 bits (61), Expect = 6.6
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Frame = +1
Query: 76 ANGDPCKLIDGNFIQKTVCGGGCNARSSIRGLEQITNPL------TIFSEYSKLLSNHPS 237
+N P ++ T G G N RSS ITNP+ T+ ++ SN S
Sbjct: 246 SNNSPLPVLPRRISTHTTSGNGGNRRSS------ITNPVFNPRKPTLSTDSFSSSSNSSS 299
Query: 238 RLPVGFMQDSACSCCSPDQYAINRPYRYTCT 330
RL V + SP + ++ R++ T
Sbjct: 300 RLRVNSINVKTPVGVSPKKELVSESVRHSAT 330
>sp|P10105|LAB_DROME Homeotic labial protein (F24) (F90-2)
Length = 635
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 133 GGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCS 285
G G N I G+ + N L + + + S HP+ + VG S S CS
Sbjct: 451 GVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCS 501
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,053,712
Number of Sequences: 369166
Number of extensions: 663816
Number of successful extensions: 1381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)