Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N20
(584 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81B10|YX86_BACCR Putative nucleotidase BC3386 32 1.2
sp|P54267|CHSG_ASPFU Chitin synthase G (Chitin-UDP acetyl-g... 32 1.5
sp|P60571|PANX2_RAT Pannexin-2 32 1.5
sp|Q92197|CHSC_ASPFU Chitin synthase C (Chitin-UDP acetyl-g... 32 1.5
sp|O93746|DPOL2_AERPE DNA polymerase 2 (DNA polymerase II) 31 2.0
sp|Q6IMP4|PANX2_MOUSE Pannexin-2 31 2.6
sp|Q00757|CHSB_EMENI Chitin synthase B (Chitin-UDP acetyl-g... 30 3.4
sp|P08923|LTK_MOUSE Leukocyte tyrosine kinase receptor prec... 29 9.8
sp|P29148|Npre_PAEPO Bacillolysin precursor (Neutral protease) 29 9.8
sp|Q5DZB8|GLGB_VIBF1 1,4-alpha-glucan branching enzyme (Gly... 29 9.8
>sp|Q81B10|YX86_BACCR Putative nucleotidase BC3386
Length = 189
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = -1
Query: 245 WIPEKSDFPIYDEPTNWGLLDEKKIRWNNQLKEMSKPDLLTTYTDSFLTPPIDAYSRT 72
W+ EK FP++++ +G+ DE+KI + ++K D ++ + PI+ Y++T
Sbjct: 107 WLIEKG-FPVHEDRFFYGMKDEEKIHFIQEIKLNYFFDDKPAVLETLIGKPINVYAKT 163
>sp|P54267|CHSG_ASPFU Chitin synthase G (Chitin-UDP acetyl-glucosaminyl transferase G)
(Class-III chitin synthase G)
Length = 911
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 485 HNTTYRTNFSATSLP--FPDVIMRRKNWLRGDGIGGHFMLRHHGHVY 351
H T + + + T +P P+ I +R+ WL G G + L H G +Y
Sbjct: 513 HLTYVKASKAETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMY 559
>sp|P60571|PANX2_RAT Pannexin-2
Length = 664
Score = 31.6 bits (70), Expect = 1.5
Identities = 27/91 (29%), Positives = 38/91 (41%)
Frame = -1
Query: 347 DNLITFYDQDFNKRERRGRNVLPPLRKWDSTNISWIPEKSDFPIYDEPTNWGLLDEKKIR 168
D+ I D N E G + PP+ K + WIP + P +P L +R
Sbjct: 390 DSGIQTVDPSINPAEPEG-SAEPPVVKRPRKKMKWIPTSNPLP---QPFKEQLAI---MR 442
Query: 167 WNNQLKEMSKPDLLTTYTDSFLTPPIDAYSR 75
N E KP T TD+ + P +DA +R
Sbjct: 443 VENSKTEKPKPVRRKTATDTLIAPLLDAGAR 473
>sp|Q92197|CHSC_ASPFU Chitin synthase C (Chitin-UDP acetyl-glucosaminyl transferase C)
(Class-III chitin synthase C)
Length = 889
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 500 KENYKHNTTY-RTNFSATSLP--FPDVIMRRKNWLRGDGIGGHFMLRHHGHVY 351
K YK + TY + + T +P P+ I +R+ WL G + + H G +Y
Sbjct: 489 KAGYKWHLTYVKASKGETDVPEAAPEYISQRRRWLNGSFAASLYSIMHFGRIY 541
>sp|O93746|DPOL2_AERPE DNA polymerase 2 (DNA polymerase II)
Length = 784
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 100 VRKLSV*VVNKSGFDISFN*LFHRIFFSSNNPQLVGSSYIGKSDFSGIQLI 252
V +L V + GFDI + ++ R+FF+ + VG + GK D G + +
Sbjct: 575 VERLIRFVEEELGFDIKVDKVYRRVFFTEAKKRYVGLTVDGKIDVVGFEAV 625
>sp|Q6IMP4|PANX2_MOUSE Pannexin-2
Length = 607
Score = 30.8 bits (68), Expect = 2.6
Identities = 27/91 (29%), Positives = 38/91 (41%)
Frame = -1
Query: 347 DNLITFYDQDFNKRERRGRNVLPPLRKWDSTNISWIPEKSDFPIYDEPTNWGLLDEKKIR 168
D+ I D N E G + PP+ K + WIP + P +P L +R
Sbjct: 390 DSGIQTVDPSINPAEPDG-SAEPPVVKRPRKKMKWIPTSNPLP---QPFKEQLAI---MR 442
Query: 167 WNNQLKEMSKPDLLTTYTDSFLTPPIDAYSR 75
N E KP T TD+ + P +DA +R
Sbjct: 443 VENSKTEKPKPVRRKTATDTLIAPLLDAGAR 473
>sp|Q00757|CHSB_EMENI Chitin synthase B (Chitin-UDP acetyl-glucosaminyl transferase B)
(Class-III chitin synthase B)
Length = 916
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 437 PDVIMRRKNWLRGDGIGGHFMLRHHGHVYDD--NLITFYDQDFNKRERRGRNVLPPLRKW 264
P+ I +R+ WL G G + L H G +Y N++ + L L W
Sbjct: 536 PEFISQRRRWLNGSFAAGIYSLMHFGRMYKSGHNIVRMFFLH-----------LQMLYNW 584
Query: 263 DSTNISW 243
ST ++W
Sbjct: 585 FSTFLTW 591
>sp|P08923|LTK_MOUSE Leukocyte tyrosine kinase receptor precursor
Length = 888
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 205 GSSYIGK-SDFSGIQLIFVLSHFRKGGKTFLP 297
G+S + K DF + I+ S++RKGG+T LP
Sbjct: 651 GASRVAKIGDFGMARDIYQASYYRKGGRTLLP 682
>sp|P29148|Npre_PAEPO Bacillolysin precursor (Neutral protease)
Length = 590
Score = 28.9 bits (63), Expect = 9.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 512 LNYNKENYKHNTTYRTNFSATSLPFPDVI---MRRKNWLRGDGI 390
L + Y N Y A + F DVI ++RKNWL GD I
Sbjct: 425 LTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQRKNWLVGDDI 468
>sp|Q5DZB8|GLGB_VIBF1 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 715
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 347 HRKHDHDVVT*NDHQYHLLSANFFVSLSHLEMV 445
HRK+ HD +T + S NF +SLSH E+V
Sbjct: 490 HRKYHHDTIT--FPLVYAFSENFILSLSHDEVV 520
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,290,566
Number of Sequences: 369166
Number of extensions: 1194327
Number of successful extensions: 3434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)