Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N18
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67358|TIG_AQUAE Trigger factor (TF) 33 0.54
sp|P07978|HSP2_MOUSE Sperm histone P2 precursor (Protamine ... 32 1.2
sp|Q21313|LAML2_CAEEL Laminin-like protein K08C7.3 precursor 31 2.1
sp|Q93Y94|RPO1_NICSY DNA-directed RNA polymerase 1, mitocho... 31 2.1
sp|Q99PF4|CAD23_MOUSE Cadherin-23 precursor (Otocadherin) 31 2.7
sp|Q9H251|CAD23_HUMAN Cadherin-23 precursor (Otocadherin) 31 2.7
sp|Q5HQ34|RNH3_STAEQ Ribonuclease HIII (RNase HIII) 31 2.7
sp|Q96L93|SNX23_HUMAN Kinesin-like motor protein C20orf23 (... 30 3.5
sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E) 30 3.5
sp|O74109|RLA0_PYRHO Acidic ribosomal protein P0 homolog (L... 30 3.5
>sp|O67358|TIG_AQUAE Trigger factor (TF)
Length = 478
Score = 33.1 bits (74), Expect = 0.54
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 34 IEEINKRREDLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVS 201
IE + E + +A++Y T+D IKK F N Q+V E R K+LK ++S
Sbjct: 395 IEPTGEDIEAQYKELAEQYGTTVDEIKKY--FKENNLEQVVYEDARRKKALKEIIS 448
>sp|P07978|HSP2_MOUSE Sperm histone P2 precursor (Protamine MP2)
Length = 107
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +3
Query: 291 LSPASET*KRYWRTLDSHEHCRHRNTDRTRLLHLPHEAIFEKEIPRRRNYGNARNEGEHR 470
LSP E + Y RT H H RHR R RL H + RRR + R+ HR
Sbjct: 32 LSP--ERVEDYGRTHRGHHHHRHRRCSRKRL----HRIHKRRRSCRRRRRHSCRHRRRHR 85
Query: 471 R 473
R
Sbjct: 86 R 86
>sp|Q21313|LAML2_CAEEL Laminin-like protein K08C7.3 precursor
Length = 3672
Score = 31.2 bits (69), Expect = 2.1
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = +1
Query: 34 IEEINKRREDLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVSSSTS 213
I EI K D NS + + D+ L N +QI ++ +R +N VSS+ +
Sbjct: 2180 INEITKMLNDEENSFGNVFGDAQDI--------LTNSTQIQNKLVRTKTHSQNSVSSAKN 2231
Query: 214 VTLEYMVNNALNGLDIVNDNLFKLQNFLQQAR 309
+T LNG + + + + + Q Q R
Sbjct: 2232 IT--------LNGTEFLQEVMKRAQRARQSVR 2255
>sp|Q93Y94|RPO1_NICSY DNA-directed RNA polymerase 1, mitochondrial precursor (T7
bacteriophage-type single subunit RNA polymerase 1)
(NsRpoT-A)
Length = 1002
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = +1
Query: 7 EKLREIHVLIEEINKRREDLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSE-------A 165
E + EI LIEE+NK E L ++ + T+ + +NL+ QI E A
Sbjct: 127 EDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGK-YNLLRRRQIKVETEAWEEAA 185
Query: 166 LRYSKSLKNVVSSSTSVTLEYMVNNALNGLDIVNDNLFKLQNFLQQAR 309
Y + L ++ + L YM + L + + D + Q + +
Sbjct: 186 KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233
>sp|Q99PF4|CAD23_MOUSE Cadherin-23 precursor (Otocadherin)
Length = 3354
Score = 30.8 bits (68), Expect = 2.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 566 LLTNYIRIKQVYNQSINQSIFCCHSSLSE 480
+L +Y+R+K+++ Q + Q CHSS+SE
Sbjct: 3218 VLEDYLRLKKLFAQRMVQKASSCHSSISE 3246
>sp|Q9H251|CAD23_HUMAN Cadherin-23 precursor (Otocadherin)
Length = 3354
Score = 30.8 bits (68), Expect = 2.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 566 LLTNYIRIKQVYNQSINQSIFCCHSSLSE 480
+L +Y+R+K+++ Q + Q CHSS+SE
Sbjct: 3218 VLEDYLRLKKLFAQRMVQKASSCHSSISE 3246
>sp|Q5HQ34|RNH3_STAEQ Ribonuclease HIII (RNase HIII)
Length = 308
Score = 30.8 bits (68), Expect = 2.7
Identities = 29/112 (25%), Positives = 51/112 (45%)
Frame = +1
Query: 97 TLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVSSSTSVTLEYMVNNALNGLDIVNDNL 276
TLD +K N +L SQ+ +A+ +++++KNV+ L+Y+V + ++
Sbjct: 153 TLDNVKYNERQSL-GWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAKREVYQHYA 211
Query: 277 FKLQNFLQQARPESVTGELLIHTSTAVTEIRIALDSFIYHMKRYSRKKFHGE 432
F + + E+ + +TA R A F+ HM S KK H E
Sbjct: 212 LSALPFPDKTKFETKGESKSLAIATASIISRYA---FVKHMDHIS-KKLHME 259
>sp|Q96L93|SNX23_HUMAN Kinesin-like motor protein C20orf23 (Sorting nexin 23)
Length = 1317
Score = 30.4 bits (67), Expect = 3.5
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +1
Query: 37 EEINKRREDLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVSSS 207
EE+ +R +DLH +++ S + D +K N H+ + L+Y + + + ++
Sbjct: 1124 EEVQRRLQDLHRVISEGCSTSADTMKDNEKL----HNGTIQRKLKYERMVSRSLGAN 1176
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E)
Length = 968
Score = 30.4 bits (67), Expect = 3.5
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +1
Query: 34 IEEINKRREDLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVSSSTS 213
IEEI+K+ + + + L+ +KKNN +S + +Y+ SLK + +
Sbjct: 615 IEEIHKKDNQVSSIDNNKKKQLLNKVKKNNNH---QYSHVFDNNTKYT-SLKKIDFQKNT 670
Query: 214 VTLEYMVNNALNGLDIVNDNLFKLQNFL 297
+ E N+LN L N +F NFL
Sbjct: 671 IDFEL---NSLNFLKKNNFYIFSKYNFL 695
>sp|O74109|RLA0_PYRHO Acidic ribosomal protein P0 homolog (L10E)
Length = 342
Score = 30.4 bits (67), Expect = 3.5
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +1
Query: 61 DLHNSVAQEYSNTLDVIKKNNPFNLINHSQIVSEALRYSKSLKNVVSSSTSVTLEYMVNN 240
D+ + A S +I++N ++ + ++ A++ K+ K + +EY+
Sbjct: 29 DVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIK--KAAKELGKPELEKLVEYIDRG 86
Query: 241 ALNGLDIVNDNLFKLQNFLQQAR 309
A G+ + N N FKL FLQQ R
Sbjct: 87 A--GILVTNMNPFKLYKFLQQNR 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,197,714
Number of Sequences: 369166
Number of extensions: 1294715
Number of successful extensions: 4237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4231
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)