Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N13
(770 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Prote... 246 4e-65
sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Prote... 245 8e-65
sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S p... 234 3e-61
sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Pr... 209 7e-54
sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Pr... 208 1e-53
sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S p... 203 4e-52
sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S p... 201 2e-51
sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S p... 197 2e-50
sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Prote... 196 6e-50
sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6 193 5e-49
>sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 246 bits (629), Expect = 4e-65
Identities = 119/222 (53%), Positives = 162/222 (72%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKAI+ GL SV +RG +C V+ TQ+K+PDK+++ ++ T LFKITES GCVMTGM
Sbjct: 26 EYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RSQV RA+ EAA GYE+ D +C+ IADI+QVYTQ+AEMRPLGC MI + D
Sbjct: 86 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGID- 144
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++T ++ VE AI CLS
Sbjct: 145 EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLST 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V S+DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 205 VLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
Score = 37.4 bits (85), Expect = 0.045
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3
Query: 18 SSGFDRYMTIFSPEGRLFQ 74
S+GFDR++TIFSPEGRL+Q
Sbjct: 6 SAGFDRHITIFSPEGRLYQ 24
>sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain) (27 kDa prosomal protein) (PROS-27) (p27K)
sp|P60901|PSA6_RAT Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 245 bits (626), Expect = 8e-65
Identities = 118/222 (53%), Positives = 162/222 (72%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKAI+ GL SV +RG +C V+ TQ+K+PDK+++ ++ T LFKITE+ GCVMTGM
Sbjct: 26 EYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RSQV RA+ EAA GYE+ D +C+ IADI+QVYTQ+AEMRPLGC MI + D
Sbjct: 86 DSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGID- 144
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++T ++ VE AI CLS
Sbjct: 145 EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLST 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V S+DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 205 VLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
Score = 37.4 bits (85), Expect = 0.045
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3
Query: 18 SSGFDRYMTIFSPEGRLFQ 74
S+GFDR++TIFSPEGRL+Q
Sbjct: 6 SAGFDRHITIFSPEGRLYQ 24
>sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S proteasome subunit alpha-1)
Length = 244
Score = 234 bits (596), Expect = 3e-61
Identities = 116/222 (52%), Positives = 162/222 (72%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKAI+ + + +V ++ +C VVATQ+K+ +K I + T LF+IT+ GC MTG I
Sbjct: 26 EYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RSQV +A+ EAA GYEM D +CR IADINQVYTQ+AEMRPLGCSM+ ++YD
Sbjct: 86 DSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDN 145
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E P +YKTDP+G+ +G +A +VGAK LEA SYLEKK + N + ++A+++AI+CLS
Sbjct: 146 EIG-PSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPN--LSEEKAIQLAISCLSS 202
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V ++DFK +EIG+V++ P FR+L + +I+E+LT IAEKD
Sbjct: 203 VLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD 244
Score = 37.4 bits (85), Expect = 0.045
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3
Query: 18 SSGFDRYMTIFSPEGRLFQ 74
S+GFDR++TIFSPEGRL+Q
Sbjct: 6 SAGFDRHITIFSPEGRLYQ 24
>sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-1) (Proteasome component
1)
Length = 246
Score = 209 bits (532), Expect = 7e-54
Identities = 106/222 (47%), Positives = 150/222 (67%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA+ G+ S+G+RG + V TQ+K+PDK+++++S T LF IT+ G V TG+
Sbjct: 26 EYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RS V +A+ +AA GYEM D + + IAD +QVYTQ A MRPLG + + D
Sbjct: 86 DARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVD- 144
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E N PLLYK DP+G GH+A + G K+ EA ++LEKK+++N FT DE V+ AI+ L
Sbjct: 145 EENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQS 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V DFKA E+E+G+V + P FR L+ E+I+E+LTAI+E+D
Sbjct: 205 VLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246
Score = 35.8 bits (81), Expect = 0.13
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +3
Query: 21 SGFDRYMTIFSPEGRLFQ 74
+G+DR++TIFSPEGRLFQ
Sbjct: 7 AGYDRHITIFSPEGRLFQ 24
>sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-2)
Length = 246
Score = 208 bits (530), Expect = 1e-53
Identities = 107/222 (48%), Positives = 148/222 (66%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA+ G+ S+G+RG + V TQ+K+PDK+++++S + LF +T+ G + TGM
Sbjct: 26 EYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RS V +A+ EAA GYEM D + + IAD +QVYTQ A MRPLG + L D
Sbjct: 86 DSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGID- 144
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E PLLYK DP+G GH+A + G K+ EA ++LEKK+++N FT DE V+ AI+ L
Sbjct: 145 EERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQS 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V DFKA E+E+G+V D P FR L E+IDE+LTAI+E+D
Sbjct: 205 VLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246
Score = 35.8 bits (81), Expect = 0.13
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +3
Query: 21 SGFDRYMTIFSPEGRLFQ 74
+G+DR++TIFSPEGRLFQ
Sbjct: 7 AGYDRHITIFSPEGRLFQ 24
>sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1) (Proteasome iota
subunit)
Length = 246
Score = 203 bits (517), Expect = 4e-52
Identities = 104/222 (46%), Positives = 146/222 (65%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA+ G+ S+G+RG + V T +K+PDK+++ S T LF IT+ G + TGM
Sbjct: 26 EYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D R+ V +A+ EAA GYEM D + + IAD +QVYTQ A MRPLG + L D
Sbjct: 86 DARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDD 145
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E+ P LYK DP+G GH+A + G K EA ++LEKK++ + FT +E V+ AI+ L
Sbjct: 146 EYG-PQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQS 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V DFKA E+E+G+V +D P FRVL+ ++IDE+LTAI+E+D
Sbjct: 205 VLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246
Score = 35.4 bits (80), Expect = 0.17
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 3 RGTSGSSGFDRYMTIFSPEGRLFQ 74
RG+ G G++R++TIFSPEGRLFQ
Sbjct: 3 RGSGG--GYNRHITIFSPEGRLFQ 24
>sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 201 bits (510), Expect = 2e-51
Identities = 102/222 (45%), Positives = 149/222 (67%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA+ G+ S+G+RG + V TQ+K+PDK++++ S + LF IT+ G + TGM
Sbjct: 26 EYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D R+ V +A+ EAA GYEM D + + IAD +QVYTQ A MRPLG + L D
Sbjct: 86 DARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGID- 144
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E P L+K DP+G GH+A + G+K+ EA ++LEKK++ + F+ +E V+ AI+ L
Sbjct: 145 EEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQS 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V DFKA E+E+G+V ++ P FRVL+ E+IDE+LTAI+E+D
Sbjct: 205 VLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246
Score = 37.4 bits (85), Expect = 0.045
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 3 RGTSGSSGFDRYMTIFSPEGRLFQ 74
RG+ G G+DR++TIFSPEGRLFQ
Sbjct: 3 RGSGG--GYDRHITIFSPEGRLFQ 24
>sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 197 bits (502), Expect = 2e-50
Identities = 102/222 (45%), Positives = 147/222 (66%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA+ G+ S+G+RG + V TQ+K+PDK+++ S T LF IT+ G + TG+
Sbjct: 26 EYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTA 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D RS V +A+ EAA GYEM D + + IAD QVYTQ A MRPLG + L YD
Sbjct: 86 DARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDE 145
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E N L+K DP+G GH+A + G K+ EA ++LEKK++ + +F+ +E V++AI+ L
Sbjct: 146 EKNAQ-LFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQS 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
V DFKA E+E+G+V +D FR L+ E+ID++LTAI+E+D
Sbjct: 205 VLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 3 RGTSGSSGFDRYMTIFSPEGRLFQ 74
RGT +G+DR++TIFSPEGRL+Q
Sbjct: 3 RGTG--AGYDRHITIFSPEGRLYQ 24
>sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Proteasome subunit alpha 1)
Length = 246
Score = 196 bits (498), Expect = 6e-50
Identities = 93/222 (41%), Positives = 149/222 (67%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKAI+ L +V ++G + V+A Q+++PD +I ++ T +++I++S GC GMIP
Sbjct: 26 EYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIP 85
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D + Q+ RAQ EAA GY+M C+ + + +AD+NQ YTQ+AEMR LGC+++ +SYD
Sbjct: 86 DAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDD 145
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEFTLDEAVEVAINCLSH 613
E P +Y+ DP+G+ G + V+VG KQL A S+LEKK++K E T EA+E+AI L
Sbjct: 146 E-KGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQT 204
Query: 614 VQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
+D ++ +LE+ +VT+D F L+ ++++ +L IA +D
Sbjct: 205 SLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHHLNQIANRD 246
Score = 36.2 bits (82), Expect = 0.10
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +3
Query: 18 SSGFDRYMTIFSPEGRLFQ 74
S+GFDR++TIFSPEGR++Q
Sbjct: 6 SAGFDRHITIFSPEGRVYQ 24
>sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6
Length = 244
Score = 193 bits (490), Expect = 5e-49
Identities = 105/223 (47%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Frame = +2
Query: 74 KYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIEKNSATRLFKITESTGCVMTGMIP 253
+YAFKA + G+ SVG+ G NC V +Q+K+PDK+I+ ++ +F IT+ GCVMTG I
Sbjct: 24 EYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIA 83
Query: 254 DCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAEMRPLGCSMIALSYDI 433
D R+QVSRA+ EAA GY M CD + + +A+I QV TQ A MRPLG +M ++ D
Sbjct: 84 DARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDD 143
Query: 434 EFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNK-EFTLDEAVEVAINCLS 610
E P L+K DP+GF G++A + G KQ E ++LEK+ +K+ L + VE I L
Sbjct: 144 EIG-PSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALM 202
Query: 611 HVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 739
S DFK+ EL+IG+V D P FRVLS E+I+ +L +IAEKD
Sbjct: 203 SSLSTDFKSTELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244
Score = 34.3 bits (77), Expect = 0.38
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 12 SGSSGFDRYMTIFSPEGRLFQ 74
S + GFDR +T+FSPEGRL+Q
Sbjct: 2 SQARGFDRTITVFSPEGRLYQ 22
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,159,735
Number of Sequences: 369166
Number of extensions: 1711034
Number of successful extensions: 4410
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4268
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)