Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N10
(157 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 68 8e-12
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 68 8e-12
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 68 8e-12
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 67 1e-11
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 67 2e-11
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 59 3e-09
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 59 4e-09
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 42 3e-04
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 42 6e-04
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 35 0.071
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRL EDM
Sbjct: 170 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDM 220
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRL EDM
Sbjct: 170 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDM 220
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST+MLWL+T S +G NLGGSLTR EK+ +SD + HI NIGRL EDM
Sbjct: 199 TSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDM 249
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 67.0 bits (162), Expect = 1e-11
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST+MLWL+T + +G NLGGSLTR EK+ +SD++ HI NIGRL EDM
Sbjct: 170 TSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDM 220
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 66.6 bits (161), Expect = 2e-11
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGED 152
TSTIMLWL+T S +G NLGGSLTR E + P++D N H+ N+GR+ ED
Sbjct: 169 TSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIED 218
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 59.3 bits (142), Expect = 3e-09
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST+ML +ET N TG NL GSLTR EKE ++ + H VNIG++ EDM
Sbjct: 172 TSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDM 222
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TST MLWL+T +G NLGGSLTR E++ +S+++ HI NIG++ E+M
Sbjct: 170 TSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEM 220
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 42.4 bits (98), Expect = 3e-04
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCF-----NLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TSTI+L+L + + E NL G LTR T + +P +D + I N+G+L E+M
Sbjct: 165 TSTIILFLSSGSEEQSALPSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEM 220
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 41.6 bits (96), Expect = 6e-04
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +3
Query: 3 TSTIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLGEDM 155
TSTIML L T + +G F L GS+ R + E+ ++D H+ N+GR+ E++
Sbjct: 171 TSTIMLSLTTDDESSGKFGLSGSIRRQMKMELAVAD--GHLCNMGRMIEEL 219
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 34.7 bits (78), Expect = 0.071
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Frame = +3
Query: 3 TSTIMLWLE-TQNSETGCFNLGGSLTRMTEKEVPLSDA-------NNHIVNIGRLGEDM 155
T+TI+L L+ T+ + L G+LTR TEK++ + + +H+ N+G L ED+
Sbjct: 179 TTTIILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDI 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,579,448
Number of Sequences: 369166
Number of extensions: 233003
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 68,354,980
effective HSP length: 24
effective length of database: 63,921,340
effective search space used: 1725876180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)