Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M18-2
(137 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O16102|CHD3_DROME Chromodomain helicase-DNA-binding prot... 29 2.9
sp|Q9Z277|BAZ1B_MOUSE Bromodomain adjacent to zinc finger d... 28 8.5
>sp|O16102|CHD3_DROME Chromodomain helicase-DNA-binding protein 3
Length = 892
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 25 CDIFPEGQWLFHRINLVSSFNR 90
C+ PEGQ L H ++V+SF R
Sbjct: 125 CEWIPEGQMLLHHASMVASFQR 146
>sp|Q9Z277|BAZ1B_MOUSE Bromodomain adjacent to zinc finger domain protein 1B
(Williams-Beuren syndrome chromosome region 9 protein
homolog) (WBRS9)
Length = 1479
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 8 RSCNRRAIYSRKVNGFFIG*IWSHHSIDLK 97
R+ NR ++S +V G FI W H+SID +
Sbjct: 908 RNHNRYWLFSNEVPGLFIEKGWVHNSIDYR 937
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,722,349
Number of Sequences: 369166
Number of extensions: 212309
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 68,354,980
effective HSP length: 19
effective length of database: 64,845,015
effective search space used: 1685970390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)