Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_L20
(636 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 189 4e-48
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 185 1e-46
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 184 2e-46
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 182 5e-46
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 182 6e-46
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 182 8e-46
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 182 8e-46
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 181 1e-45
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 181 1e-45
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 180 3e-45
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 189 bits (481), Expect = 4e-48
Identities = 92/165 (55%), Positives = 126/165 (76%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
AKA A+AP V +P Q T +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V S
Sbjct: 111 AKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
E+ LL ML + PF YGL ++Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N
Sbjct: 171 ESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVN 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PTLASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 231 YPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 185 bits (469), Expect = 1e-46
Identities = 94/165 (56%), Positives = 120/165 (72%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V S
Sbjct: 111 ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F+E + +A+V L +
Sbjct: 171 EATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PTLAS+PH I N K V+ ++V TDY+ A+ +K +L DP++F
Sbjct: 231 YPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 184 bits (466), Expect = 2e-46
Identities = 94/165 (56%), Positives = 118/165 (71%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V S
Sbjct: 111 ARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF +GL IQQ+Y+NGS YSP+ LDITED + F+E + +A+V L +
Sbjct: 171 EATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+ASVPH + N K V+ L+V TDY+ A+ +K +L DP+ F
Sbjct: 231 YPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 182 bits (463), Expect = 5e-46
Identities = 97/168 (57%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V S
Sbjct: 111 ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGAS 170
Query: 181 EAQLLQMLK---IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSL 351
EA LL ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L
Sbjct: 171 EATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCL 230
Query: 352 ALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
+ PTLAS+PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 231 QIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 182 bits (462), Expect = 6e-46
Identities = 95/165 (57%), Positives = 117/165 (70%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V S
Sbjct: 111 ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L +
Sbjct: 171 EATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 231 YPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 182 bits (461), Expect = 8e-46
Identities = 96/165 (58%), Positives = 116/165 (70%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V S
Sbjct: 111 ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF +GL IQQ+++NGS YSP+ LDITE + F+E + VA+V L +
Sbjct: 171 EATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 231 YPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 182 bits (461), Expect = 8e-46
Identities = 93/165 (56%), Positives = 118/165 (71%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V S
Sbjct: 111 ARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + + F+E + VA+V L +
Sbjct: 171 EATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+ASVPH I N K V+ ++V TDY AE +K +L DP+ F
Sbjct: 231 YPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 181 bits (460), Expect = 1e-45
Identities = 89/165 (53%), Positives = 118/165 (71%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+ A+AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V S
Sbjct: 111 ARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF YGL + Q+Y++GS +SP+ LDI +D+ F + +AAV L++
Sbjct: 171 EATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+AS PH IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 231 YPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 181 bits (459), Expect = 1e-45
Identities = 90/165 (54%), Positives = 118/165 (71%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V S
Sbjct: 111 ARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGAS 170
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF YGL I Q+Y++GS +SP+ LDI +D+ F +AAVSL +
Sbjct: 171 EATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIG 230
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+AS PH IAN K ++ ++ T+ K+A IKE++KDP+KF
Sbjct: 231 YPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 180 bits (456), Expect = 3e-45
Identities = 94/165 (56%), Positives = 116/165 (70%)
Frame = +1
Query: 1 AKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQS 180
A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD S
Sbjct: 102 ARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGAS 161
Query: 181 EAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALN 360
EA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L +
Sbjct: 162 EATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIG 221
Query: 361 KPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 495
PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 222 YPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,195,920
Number of Sequences: 369166
Number of extensions: 1171524
Number of successful extensions: 3027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3022
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)