Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_L12
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 35 0.18
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 35 0.18
sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D... 32 0.91
sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR) 32 1.6
sp|Q9TU19|NPHP1_CANFA Nephrocystin-1 32 1.6
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 32 1.6
sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine am... 31 2.0
sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 31 2.6
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3 30 3.5
sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory s... 30 4.5
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 34.7 bits (78), Expect = 0.18
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 72 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 206
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 107 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 166
Query: 207 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 380
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 167 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 224
Query: 381 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 488
EV V + ++D N+E + D TNDD+
Sbjct: 225 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 34.7 bits (78), Expect = 0.18
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 72 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 206
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 24 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 83
Query: 207 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 380
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 84 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 141
Query: 381 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 488
EV V + ++D N+E + D TNDD+
Sbjct: 142 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|P19269|AMY1_DEBOC Alpha-amylase 1 precursor (1,4-alpha-D-glucan glucanohydrolase 1)
Length = 512
Score = 32.3 bits (72), Expect = 0.91
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +3
Query: 39 HGYYEEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMS-SGNKETL 215
HGY+ + DE+ N G T + QLA ++ S+ M V YNH + +G+ ++
Sbjct: 116 HGYWMKNIDELNTNFG----TADELKQLASELHSR---SMLLMVDVVYNHYAWNGDGSSV 168
Query: 216 DLM----FNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGL 338
D FN+ + + + Y DQ ++E+ W G + L
Sbjct: 169 DYSSFTPFNQQSYFHDYCLITNY---NDQTNVEDC-WEGDTEVSL 209
>sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR)
Length = 711
Score = 31.6 bits (70), Expect = 1.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 157 SEPCQPCAIITCLRETRKRWILCSIKPSISTPPYQNQHI 273
++P P A++ L + +R +LC +K S S P ++N HI
Sbjct: 484 TKPETPSALLCSLNQLCERQLLCVVKWSKSLPGFRNMHI 522
>sp|Q9TU19|NPHP1_CANFA Nephrocystin-1
Length = 565
Score = 31.6 bits (70), Expect = 1.6
Identities = 30/125 (24%), Positives = 49/125 (39%)
Frame = +3
Query: 51 EEFTDEMKKNSGDESKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFN 230
EE +E ++ G+E ++E + +N S+ S ++ + +G DL F
Sbjct: 8 EEEEEESEEGGGEEEESEEEEEEKQENESHHQATSKEYIAVGDFTAQQAG-----DLTFK 62
Query: 231 KTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEE 410
K E + K WI +N+ G I + Y E GQ+ S EE
Sbjct: 63 KREILLIIEKKPDGW------------WIAKNAKGNKGLIPRTYVEPYNKEEGQDTSEEE 110
Query: 411 VSQND 425
S+ D
Sbjct: 111 DSEED 115
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 31.6 bits (70), Expect = 1.6
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 102 ESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEI 281
+S ++A +F N L +S++ YN++S NK L K ++S + + +
Sbjct: 435 DSESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFLFSAIKSNATKHK 488
Query: 282 RDQ--ISIENIKWIGQNSIGLLSNIKESLSA 368
R Q S+EN +G NS + + K S++A
Sbjct: 489 RTQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
>sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine amidase
Length = 233
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 204 KETLDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 350
K LDL FN + + LS+ +Q+++ I ++ I + S+G+LS+I
Sbjct: 133 KTVLDLQFNNFQKMEINLSRYIFQQLKKIIKLDKIN-LNYASLGILSSI 180
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
Length = 1957
Score = 30.8 bits (68), Expect = 2.6
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Frame = +3
Query: 54 EFTDEMKKNSGDESKTESTVMQLAQNFS--NKL----RVSVRAMSTVCYNHMSSGNKETL 215
E T G + +S + L++N N L + +V+ +ST + + N
Sbjct: 1524 EITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLA 1583
Query: 216 DLMFNKTEHIYSTLSKS------TYQEIR----DQISIENIKWIGQNSIGLLSNIKESLS 365
DL ++K++ + S L +S T +E++ +++S+ QN + LSNIK+SLS
Sbjct: 1584 DLEYHKSQ-VESELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLS 1642
Query: 366 AKYKVEVGQNPSVEEVSQNDEDSTHNEEANLRDYLST 476
+ SV + + + ++ E +L+D L++
Sbjct: 1643 EDLRTLRSLEDSVASLQKECKIKSNTVE-SLQDVLTS 1678
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3
Length = 3497
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 276 EIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVSQNDEDSTHNEEAN 455
E + + I ++ +S+ + S KE +K K + + P + +VS NDEDS EE
Sbjct: 1787 EYVETVQIVDLSEDSDSSVRVDSQGKEMRRSKSKHSLNETP-LPKVSDNDEDSAEQEEDL 1845
Query: 456 LR 461
LR
Sbjct: 1846 LR 1847
>sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory subunit SDS22
Length = 338
Score = 30.0 bits (66), Expect = 4.5
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 186 HMSSG-NKET----LDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 350
H+SS NK T LDL FNK +HI + + + +EN+ ++ QNSI + N+
Sbjct: 104 HISSNVNKLTKLTSLDLSFNKIKHI---------KNLENLTDLENLYFV-QNSISKIENL 153
Query: 351 KESLSAKYKVEVGQN 395
S K +E+G N
Sbjct: 154 STLKSLK-NLELGGN 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,349,589
Number of Sequences: 369166
Number of extensions: 1193520
Number of successful extensions: 3759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)