Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_L02
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52361|UL31_HHV7J Protein U37 33 0.16
sp|P15892|VG1_SPV1R Capsid protein (VP1) 31 0.77
sp|P68579|SUNT_BACSU SPBc2 prophage-derived sublancin 168 p... 29 3.8
sp|Q92335|TBA_SORMA Tubulin alpha chain 28 5.0
sp|O50016|A2S1_MAIZE Clathrin coat assembly protein AP17 (C... 28 6.5
sp|P38669|TBA2_NEUCR Tubulin alpha-B chain 28 8.5
>sp|P52361|UL31_HHV7J Protein U37
Length = 259
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 281 TELLNKTSIKLLNLVFVIYPEII*VIVFRNLQTKMKNYMKINMSLLILLSTSFAIYQHHK 102
T L S+K L+ VF ++PE + K N MK+ ++ + F + HH+
Sbjct: 27 TNLSLSLSLKELHSVFKLFPEY---------ELKFLNMMKLPITGKEPIKIPFDLSLHHQ 77
Query: 101 HTRVSLNQYSN 69
HT + L+ Y+N
Sbjct: 78 HTCLDLSPYAN 88
>sp|P15892|VG1_SPV1R Capsid protein (VP1)
Length = 715
Score = 31.2 bits (69), Expect = 0.77
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 23/109 (21%)
Frame = -1
Query: 308 QNFNNVILITELLNKTSI-KLLNLVFVI----YPEII*VIVFRNLQTKMKNYMKINMSLL 144
QNFNN++LI + +K KLLN +F I Y + I T ++ Y N
Sbjct: 446 QNFNNILLIENINDKLQFDKLLNSMFKISQKFYTNYLRTIFDLENNTYVQGY---NKKYG 502
Query: 143 ILLSTSFAIYQHH------------------KHTRVSLNQYSNIISLDF 51
+L++ F IY + K+ ++N Y ++ + DF
Sbjct: 503 LLVNNGFKIYPRYFYFSDKYKQLDIKLYSAFKNRFYTINNYGSVFNYDF 551
>sp|P68579|SUNT_BACSU SPBc2 prophage-derived sublancin 168 processing and transport
ATP-binding protein sunT
sp|P68580|SUNT_BPSPC Sublancin 168 processing and transport ATP-binding protein sunT
Length = 705
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = -3
Query: 183 ENEELYEDKHESSNIVVNFICNLPT 109
+N++L EDK +S+++++NF+ N+ T
Sbjct: 332 KNQKLMEDKAKSTSLLINFLKNMTT 356
>sp|Q92335|TBA_SORMA Tubulin alpha chain
Length = 449
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 275 LLNKTSIKLLNLVFVIYPEII*VIVFRNLQTKMKNYMKINMSLLILLSTSFAIYQHHKHT 96
L T+++ + F++ E I I RNL + NY +N + ++S+ A +
Sbjct: 189 LTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSL 248
Query: 95 RVSLNQY-SNIISLDFIYF 42
V LN++ +N++ I+F
Sbjct: 249 NVDLNEFQTNLVPYPRIHF 267
>sp|O50016|A2S1_MAIZE Clathrin coat assembly protein AP17 (Clathrin coat-associated
protein AP17) (Plasma membrane adaptor AP-2 17 kDa
protein) (Clathrin assembly protein 2 small chain)
Length = 132
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 75 ILIQTYSGVFM-VLVDCK*S*QQY*KT-HVYLHIILHFRLKITEYNNLYNFRIYYKYKV 245
++ + Y+G+F + VD + Y + H+++ I+ HF + E + ++NF Y+Y +
Sbjct: 57 VIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLI 115
>sp|P38669|TBA2_NEUCR Tubulin alpha-B chain
Length = 449
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 275 LLNKTSIKLLNLVFVIYPEII*VIVFRNLQTKMKNYMKINMSLLILLSTSFAIYQHHKHT 96
L T+++ + F++ E I I RNL + NY +N + ++S+ A +
Sbjct: 189 LTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSL 248
Query: 95 RVSLNQY-SNIISLDFIYF 42
V LN++ +N++ I+F
Sbjct: 249 NVDLNEFQTNLVPYPRIHF 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,571,531
Number of Sequences: 369166
Number of extensions: 422219
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)