Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K20
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24439|ATPO_DROME ATP synthase O subunit, mitochondrial ... 169 7e-42
sp|P13621|ATPO_BOVIN ATP synthase O subunit, mitochondrial ... 138 1e-32
sp|Q5RD23|ATPO_PONPY ATP synthase O subunit, mitochondrial ... 138 1e-32
sp|P48047|ATPO_HUMAN ATP synthase O subunit, mitochondrial ... 137 3e-32
sp|Q06647|ATPO_RAT ATP synthase O subunit, mitochondrial pr... 135 7e-32
sp|Q9DB20|ATPO_MOUSE ATP synthase O subunit, mitochondrial ... 132 8e-31
sp|Q96251|ATPO_ARATH ATP synthase delta chain, mitochondria... 126 4e-29
sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondria... 119 9e-27
sp|Q9P602|ATPO_NEUCR ATP synthase subunit 5, mitochondrial ... 113 5e-25
sp|O74190|ATPO_KLULA ATP synthase subunit 5, mitochondrial ... 105 1e-22
>sp|Q24439|ATPO_DROME ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 209
Score = 169 bits (427), Expect = 7e-42
Identities = 78/199 (39%), Positives = 135/199 (67%)
Frame = +2
Query: 8 LARKFSTSAIHHTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDKK 187
L+R S++A TV+ P+Q+FG+EGRYATALYSAA KL+QL+ VE D+ L+ +++DKK
Sbjct: 10 LSRTLSSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQLDQVEKDLTALQATIRSDKK 69
Query: 188 FLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIFE 367
E++ P++N+ + ++A+++A KL F+ ++ NG+L + +++++ +I
Sbjct: 70 LREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMA 129
Query: 368 ASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDKF 547
A +G V C + TAKP+D + K+ AL+ F+ N+ + + ++D +IGG VSIGDK+
Sbjct: 130 AHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKY 189
Query: 548 VDMSVAKKIRMFQDVLERA 604
VDMS+A K++++ DV++ A
Sbjct: 190 VDMSIATKVKLYTDVIQTA 208
>sp|P13621|ATPO_BOVIN ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 138 bits (348), Expect = 1e-32
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 3/194 (1%)
Frame = +2
Query: 5 QLARKFSTSAIH---HTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLK 175
Q R FSTS + V+ P+Q++GIEGRYATALYSAA K N+LE VE ++ ++ +LK
Sbjct: 11 QQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK 70
Query: 176 TDKKFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMD 355
K LN P + RS+K ++ K FS +++ +NG+L T +++S+
Sbjct: 71 EPKMAASLLN-PYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFS 129
Query: 356 SIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSI 535
++ +G V C +TTA +DE T E L+ F+SK Q + +E KID ++GG V I
Sbjct: 130 TMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRI 189
Query: 536 GDKFVDMSVAKKIR 577
G+K+VDMS KI+
Sbjct: 190 GEKYVDMSAKTKIQ 203
>sp|Q5RD23|ATPO_PONPY ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 138 bits (347), Expect = 1e-32
Identities = 76/191 (39%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +2
Query: 14 RKFSTSAIH---HTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDK 184
R FSTS + V+ P+Q++GIEGRYATALYSAA K N+LE VE ++ ++ +LK K
Sbjct: 14 RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK 73
Query: 185 KFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIF 364
LN P + RS+K ++ K FS +++ +NG+L T ++S+ ++
Sbjct: 74 VAAPVLN-PYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132
Query: 365 EASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDK 544
A +G V C +T+A P++EAT E L+ F+S+ Q + +E K D ++GG V IG+K
Sbjct: 133 SAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEK 192
Query: 545 FVDMSVAKKIR 577
+VDMSV KI+
Sbjct: 193 YVDMSVKTKIQ 203
>sp|P48047|ATPO_HUMAN ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 137 bits (344), Expect = 3e-32
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 3/191 (1%)
Frame = +2
Query: 14 RKFSTSAIH---HTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDK 184
R FSTS + V+ P+Q++GIEGRYATALYSAA K N+LE VE ++ ++ +LK K
Sbjct: 14 RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK 73
Query: 185 KFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIF 364
LN P + RS+K ++ K FS +++ +NG+L T ++S+ ++
Sbjct: 74 VAASVLN-PYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132
Query: 365 EASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDK 544
+G V C +T+A P++EAT E L+ F+S+ Q + +E K D ++GG V IG+K
Sbjct: 133 SVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEK 192
Query: 545 FVDMSVAKKIR 577
+VDMSV KI+
Sbjct: 193 YVDMSVKTKIQ 203
>sp|Q06647|ATPO_RAT ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 135 bits (341), Expect = 7e-32
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Frame = +2
Query: 14 RKFSTSAIH---HTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDK 184
R FSTS + V+ P+Q++GIEGRYATALYSAA K +L+ VE ++ ++ +LK K
Sbjct: 14 RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPK 73
Query: 185 KFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIF 364
L LN P + RS+K +++ K FS +++ +NG+L T ++S+ +I
Sbjct: 74 VSLAVLN-PYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIM 132
Query: 365 EASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDK 544
+G V C +TTA P+DEA E L F+SK Q + +E K D ++GG V IG+K
Sbjct: 133 SVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEK 192
Query: 545 FVDMSVAKKIR 577
+VDMS KI+
Sbjct: 193 YVDMSAKSKIQ 203
>sp|Q9DB20|ATPO_MOUSE ATP synthase O subunit, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 213
Score = 132 bits (332), Expect = 8e-31
Identities = 74/191 (38%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Frame = +2
Query: 14 RKFSTSAIH---HTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDK 184
R FSTS + V+ P+Q++GIEGRYATALYSAA K +L+ VE ++ ++ +LK K
Sbjct: 14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPK 73
Query: 185 KFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIF 364
L LN P + R++K ++ + FS +++ +NG+L T I+S+ +I
Sbjct: 74 VSLAVLN-PYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIM 132
Query: 365 EASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDK 544
+G V C +TTA P+D+A E L+ F+S NQ + +E K D ++GG V IG+K
Sbjct: 133 SVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEK 192
Query: 545 FVDMSVAKKIR 577
+VDMS KI+
Sbjct: 193 YVDMSAKSKIQ 203
>sp|Q96251|ATPO_ARATH ATP synthase delta chain, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 238
Score = 126 bits (317), Expect = 4e-29
Identities = 67/200 (33%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Frame = +2
Query: 2 FQLARKFSTSAIHHT--VQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLK 175
F R ++T++ T V+VPI L G G +A+ LY AAVK+N LE +E D++++ +K
Sbjct: 30 FPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMK 89
Query: 176 TDKKFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMD 355
T F +F DP + R + +A++ A + F++P K F ++ +NG+L +I+
Sbjct: 90 TAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFM 149
Query: 356 SIFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSI 535
+ A +G+V+ ++TT P+ A EKE LQ + +KI VE+KID + GG V
Sbjct: 150 QLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEF 209
Query: 536 GDKFVDMSVAKKIRMFQDVL 595
K +DMS+ + + + +L
Sbjct: 210 QQKVLDMSIRTRAQQMERLL 229
>sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
Length = 244
Score = 119 bits (297), Expect = 9e-27
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 2/199 (1%)
Frame = +2
Query: 5 QLARKFSTSAI--HHTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKT 178
+L R ++T++ ++VP+ ++G+ G YA+ALY AAVK N LE VE ++ L K
Sbjct: 40 ELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKK 99
Query: 179 DKKFLEFLNDPVLNRSLKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDS 358
F +F+ DP + + +A+++ + F D + F I+ +NG+L I+
Sbjct: 100 SPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKE 159
Query: 359 IFEASKGNVRCIITTAKPIDEATEKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIG 538
+ A +G V+ +TT P+ EKE A LQ V + + + +E+KID ++GG V G
Sbjct: 160 LTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFG 219
Query: 539 DKFVDMSVAKKIRMFQDVL 595
K DMS+ + R + L
Sbjct: 220 QKVFDMSIRTRARQMERFL 238
>sp|Q9P602|ATPO_NEUCR ATP synthase subunit 5, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP) (ATP synthase
chain 5)
Length = 220
Score = 113 bits (282), Expect = 5e-25
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 3/197 (1%)
Frame = +2
Query: 23 STSAIHHTVQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDKKFLEFL 202
+ +A V+ P+ LFG++G YATALY+AAVK + LE ++ L N+L D K L
Sbjct: 23 AAAAASSKVKPPVTLFGLDGTYATALYTAAVKTSALEPTAKAISSLGNLLAKDPKLASIL 82
Query: 203 NDPVLNRSLKSSAVQKALLKLNFS-DPMKRFFDIMGKNGQLHRTVSILSSMDSIFEASKG 379
P L+ + KS+ V + + S + +K F + +N +L S+++ + A++G
Sbjct: 83 ETPTLSPADKSAIVAELQKSVGVSNETVKNFLATLAENNRLGLLPSVVAKFSELMSAARG 142
Query: 380 NVRCIITTAKPIDEAT--EKEFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDKFVD 553
V ++T+A+P+D T E A +V +K+ V K++ ++IGG V IG++ +D
Sbjct: 143 EVEMVVTSAQPLDNKTLNRLESAVAKSPYVGSGKKLKVTNKVNADIIGGLVVEIGERTID 202
Query: 554 MSVAKKIRMFQDVLERA 604
+SV+ KI +L A
Sbjct: 203 LSVSSKIAKMNKLLSEA 219
>sp|O74190|ATPO_KLULA ATP synthase subunit 5, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP) (ATP synthase
chain 5)
Length = 206
Score = 105 bits (261), Expect = 1e-22
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 2/188 (1%)
Frame = +2
Query: 47 VQVPIQLFGIEGRYATALYSAAVKLNQLEVVEGDVNKLKNVLKTDKKFLEFLNDPVLNRS 226
V+ P+QLFG++G YATAL++AA K +E +N LK + D K L +P L+
Sbjct: 18 VKPPVQLFGLDGTYATALFTAASKTTSVEAAASSLNALKETVAKDTKLTSILENPALSAE 77
Query: 227 LKSSAVQKALLKLNFSDPMKRFFDIMGKNGQLHRTVSILSSMDSIFEASKGNVRCIITTA 406
++ V K+N ++ ++ +N +L + S + +A G V+ +TTA
Sbjct: 78 DRNIVVDTLSKKINLDQSVQNLLKVLAENNRLSLLEHVTSQFSKLTDAYHGLVQATVTTA 137
Query: 407 KPIDEATEK--EFIAALQLFVSKNQKIIVEKKIDKELIGGATVSIGDKFVDMSVAKKIRM 580
+P+D K E A V K + + +E + E+ GG V + D+ VD+S+A +I
Sbjct: 138 QPLDSKLFKRVEKALAASSLVGKGKSLKLENVVKPEIQGGLIVEVSDRTVDLSIASRINK 197
Query: 581 FQDVLERA 604
VL A
Sbjct: 198 LNQVLREA 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,440,497
Number of Sequences: 369166
Number of extensions: 1086810
Number of successful extensions: 3064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)