Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K17
(764 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 211 2e-54
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 206 4e-53
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 205 1e-52
sp|P55097|CATK_MOUSE Cathepsin K precursor 203 5e-52
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 202 6e-52
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 202 6e-52
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 202 8e-52
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 201 1e-51
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 201 2e-51
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 201 2e-51
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 211 bits (537), Expect = 2e-54
Identities = 98/202 (48%), Positives = 139/202 (68%), Gaps = 2/202 (0%)
Frame = +1
Query: 16 NDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYADLTH 195
+D W+ +K Y K Y + RR IWE+N+++IQ HNL +DLG +Y LG+N++ D+T
Sbjct: 18 DDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 77
Query: 196 EEFKIKFLGLKPINRNYSRTIFMPPENMDN--YPKSVDWRKKGYVTPVKNQGQCGSCWSF 369
EEFK K+L ++R P +N P +DWR+ GYVT VK+QG CGSCW+F
Sbjct: 78 EEFKAKYL--TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAF 135
Query: 370 STTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKYGLESEADY 549
STTG +EGQ+ + + +S SEQQLVDCS + NNGC+GGLM+NA+QY++++GLE+E+ Y
Sbjct: 136 STTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSY 195
Query: 550 PYTAMDGPCKYDSTKVVAHCTG 615
PYTA++G C+Y+ VA TG
Sbjct: 196 PYTAVEGQCRYNKQLGVAKVTG 217
Score = 35.8 bits (81), Expect = 0.13
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 608 VLGFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCS 757
V G+ + G+E +L V P +VA+D F +Y+ GIY CS
Sbjct: 215 VTGYYTVHSGSEVELKNLVGARRPAAVAVDV-ESDFMMYRSGIYQSQTCS 263
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 206 bits (525), Expect = 4e-53
Identities = 105/205 (51%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Frame = +1
Query: 4 NEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
++ N +W+ +K+ +++ Y + E RR +WE+N+R IQ HN EY GKH + + +N +
Sbjct: 22 DQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFG 81
Query: 184 DLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSCW 363
D+T+EEF+ G + R +F P M PK+VDWR+KG VTPVKNQGQCGSCW
Sbjct: 82 DMTNEEFRQIVNGYRHQKHKKGR-LFQEPL-MLQIPKTVDWREKGCVTPVKNQGQCGSCW 139
Query: 364 SFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKY-GLESE 540
+FS +G LEGQ F K +L+SLSEQ LVDCS D N GCNGGLMD AFQYI++ GL+SE
Sbjct: 140 AFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSE 199
Query: 541 ADYPYTAMDGPCKYDSTKVVAHCTG 615
YPY A DG CKY + VA+ TG
Sbjct: 200 ESYPYEAKDGSCKYRAEYAVANDTG 224
Score = 65.9 bits (159), Expect = 1e-10
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSS 760
GFVDI + EK L KAVATVGPISVA+DAS PS Q Y GIY E NCSS
Sbjct: 224 GFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSS 271
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 205 bits (521), Expect = 1e-52
Identities = 103/205 (50%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Frame = +1
Query: 4 NEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
++ L+ +W +K +++ Y + E RR +WE+N++ I+ HN EY GKH + + +N +
Sbjct: 22 DQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFG 81
Query: 184 DLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSCW 363
D+T+EEF+ + +G + +F P +D PKSVDWRKKGYVTPVKNQ QCGSCW
Sbjct: 82 DMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCW 139
Query: 364 SFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKY-GLESE 540
+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGG M AFQY+++ GL+SE
Sbjct: 140 AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE 199
Query: 541 ADYPYTAMDGPCKYDSTKVVAHCTG 615
YPY A+D CKY VA+ TG
Sbjct: 200 ESYPYVAVDEICKYRPENSVANDTG 224
Score = 63.9 bits (154), Expect = 4e-10
Identities = 32/49 (65%), Positives = 35/49 (71%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSS 760
GF + G EK L KAVATVGPISVA+DA SFQ YK GIY E +CSS
Sbjct: 224 GFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSS 272
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 203 bits (516), Expect = 5e-52
Identities = 105/206 (50%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Frame = +1
Query: 7 EELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
E L+ +W L+K +QK Y S V E++RR+IWE+NL+ I HNLE LG H+Y L +N
Sbjct: 20 EMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLG 79
Query: 184 DLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSC 360
D+T EE K GL+ P +R+YS PE P S+D+RKKGYVTPVKNQGQCGSC
Sbjct: 80 DMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSC 139
Query: 361 WSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKY-GLES 537
W+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG M AFQY+Q+ G++S
Sbjct: 140 WAFSSAGALEGQLKKKTGKLLALSPQNLVDCVT--ENYGCGGGYMTTAFQYVQQNGGIDS 197
Query: 538 EADYPYTAMDGPCKYDSTKVVAHCTG 615
E YPY D C Y++T A C G
Sbjct: 198 EDAYPYVGQDESCMYNATAKAAKCRG 223
Score = 58.2 bits (139), Expect = 2e-08
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNC 754
G+ +I GNEK L +AVA VGPISV+IDAS SFQ Y G+Y + NC
Sbjct: 223 GYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENC 269
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 202 bits (515), Expect = 6e-52
Identities = 103/205 (50%), Positives = 131/205 (63%), Gaps = 1/205 (0%)
Frame = +1
Query: 4 NEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
+ L +W +K + + Y E RR +WE+N++ I+ HN EY GKHS+ + +N +
Sbjct: 22 DHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFG 81
Query: 184 DLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSCW 363
D+T EEF+ G + NR + P+SVDWR+KGYVTPVKNQGQCGSCW
Sbjct: 82 DMTSEEFRQVMNGFQ--NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCW 139
Query: 364 SFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQ-KYGLESE 540
+FS TGALEGQ FRK +L+SLSEQ LVDCS N GCNGGLMD AFQY+Q GL+SE
Sbjct: 140 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSE 199
Query: 541 ADYPYTAMDGPCKYDSTKVVAHCTG 615
YPY A + CKY+ VA+ TG
Sbjct: 200 ESYPYEATEESCKYNPKYSVANDTG 224
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/49 (71%), Positives = 36/49 (73%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSS 760
GFVDI K EK L KAVATVGPISVAIDA SF YK GIY E +CSS
Sbjct: 224 GFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSS 271
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 202 bits (515), Expect = 6e-52
Identities = 105/205 (51%), Positives = 137/205 (66%), Gaps = 1/205 (0%)
Frame = +1
Query: 4 NEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
++ + EW+ +K+ +++ Y + E RR IWE+N+R IQ HN EY G+H + + +N +
Sbjct: 22 DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFG 81
Query: 184 DLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSCW 363
D+T+EEF+ G + R +F P M PKSVDWR+KG VTPVKNQGQCGSCW
Sbjct: 82 DMTNEEFRQVVNGYRHQKHKKGR-LFQEPL-MLKIPKSVDWREKGCVTPVKNQGQCGSCW 139
Query: 364 SFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQKY-GLESE 540
+FS +G LEGQ F K +L+SLSEQ LVDCS N GCNGGLMD AFQYI++ GL+SE
Sbjct: 140 AFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSE 199
Query: 541 ADYPYTAMDGPCKYDSTKVVAHCTG 615
YPY A DG CKY + VA+ TG
Sbjct: 200 ESYPYEAKDGSCKYRAEFAVANDTG 224
Score = 65.9 bits (159), Expect = 1e-10
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSS 760
GFVDI + EK L KAVATVGPISVA+DAS PS Q Y GIY E NCSS
Sbjct: 224 GFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSS 271
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 202 bits (514), Expect = 8e-52
Identities = 105/206 (50%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Frame = +1
Query: 7 EELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
E L+ +W L+K Y K Y S V E++RR+IWE+NL++I HNLE LG H+Y L +N
Sbjct: 20 EILDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLG 79
Query: 184 DLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSC 360
D+T EE K GLK P +R++S P+ P S+D+RKKGYVTPVKNQGQCGSC
Sbjct: 80 DMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSC 139
Query: 361 WSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQK-YGLES 537
W+FS+ GALEGQ +K +L++LS Q LVDC +N GC GG M NAFQY+Q+ G++S
Sbjct: 140 WAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENYGCGGGYMTNAFQYVQRNRGIDS 197
Query: 538 EADYPYTAMDGPCKYDSTKVVAHCTG 615
E YPY D C Y+ T A C G
Sbjct: 198 EDAYPYVGQDESCMYNPTGKAAKCRG 223
Score = 63.5 bits (153), Expect = 6e-10
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSSN 763
G+ +I +GNEK L +AVA VGP+SVAIDAS SFQ Y G+Y + NCSS+
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSD 272
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 201 bits (512), Expect = 1e-51
Identities = 105/206 (50%), Positives = 135/206 (65%), Gaps = 3/206 (1%)
Frame = +1
Query: 7 EELNDEWNLYKTRYQKSYLSIV-ELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
E L+ W L+K ++K Y + V E++RR+IWE+NL+YI HNLE LG H+Y L +N
Sbjct: 20 EILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLG 79
Query: 184 DLTHEEFKIKFLGLK-PINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSC 360
D+T EE K GLK P++ + S PE P SVD+RKKGYVTPVKNQGQCGSC
Sbjct: 80 DMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSC 139
Query: 361 WSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQK-YGLES 537
W+FS+ GALEGQ +K +L++LS Q LVDC +N+GC GG M NAFQY+QK G++S
Sbjct: 140 WAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDS 197
Query: 538 EADYPYTAMDGPCKYDSTKVVAHCTG 615
E YPY + C Y+ T A C G
Sbjct: 198 EDAYPYVGQEESCMYNPTGKAAKCRG 223
Score = 60.5 bits (145), Expect = 5e-09
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSSN 763
G+ +I +GNEK L +AVA VGP+SVAIDAS SFQ Y G+Y + +C+S+
Sbjct: 223 GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD 272
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 201 bits (511), Expect = 2e-51
Identities = 101/206 (49%), Positives = 133/206 (64%), Gaps = 2/206 (0%)
Frame = +1
Query: 4 NEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEYA 183
++ LN +W +K +++ Y E RR +WE+N++ I+ HN EY GKH + + +N +
Sbjct: 22 DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFG 81
Query: 184 DLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSCW 363
D+T+EEF+ G + N+ + + PKSVDWR+KGYVTPVKNQGQCGSCW
Sbjct: 82 DMTNEEFRQVMNGFQ--NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCW 139
Query: 364 SFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQ-KYGLESE 540
+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGGLMDNAF+Y++ GL+SE
Sbjct: 140 AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSE 199
Query: 541 ADYPYTAMD-GPCKYDSTKVVAHCTG 615
YPY D C Y A+ TG
Sbjct: 200 ESYPYLGRDTETCNYKPECSAANDTG 225
Score = 61.2 bits (147), Expect = 3e-09
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCSS 760
GFVD+ + EK L KAVAT+GPISVAIDA SFQ YK GIY + +CSS
Sbjct: 225 GFVDLPQ-REKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSS 272
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 201 bits (511), Expect = 2e-51
Identities = 103/207 (49%), Positives = 134/207 (64%), Gaps = 2/207 (0%)
Frame = +1
Query: 1 INEELNDEWNLYKTRYQKSYLSIVELTRRIIWEENLRYIQHHNLEYDLGKHSYYLGVNEY 180
++ L+ W+ +K +++ Y E RR +WE+N + I HN EY GKH++ + +N +
Sbjct: 21 LDPNLDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQEYSEGKHAFRMAMNAF 80
Query: 181 ADLTHEEFKIKFLGLKPINRNYSRTIFMPPENMDNYPKSVDWRKKGYVTPVKNQGQCGSC 360
D+T+EEF+ G + N+ + + + + PKSVDW KKGYVTPVKNQGQCGSC
Sbjct: 81 GDMTNEEFRQVMNGFQ--NQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSC 138
Query: 361 WSFSTTGALEGQHFRKRKQLVSLSEQQLVDCSKDYQNNGCNGGLMDNAFQYIQ-KYGLES 537
W+FS TGALEGQ FRK +LVSLSEQ LVDCS+ N GCNGGLMDNAFQYI+ GL+S
Sbjct: 139 WAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGGLDS 198
Query: 538 EADYPYTAMD-GPCKYDSTKVVAHCTG 615
E YPY A D C Y A+ TG
Sbjct: 199 EESYPYLATDTNSCNYKPECSAANDTG 225
Score = 62.0 bits (149), Expect = 2e-09
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +2
Query: 614 GFVDIKKGNEKDLTKAVATVGPISVAIDASRPSFQLYKGGIYNEVNCS 757
GFVDI + EK L KAVATVGPISVAIDA SFQ YK GIY + +CS
Sbjct: 225 GFVDIPQ-REKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCS 271
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,864,747
Number of Sequences: 369166
Number of extensions: 1810005
Number of successful extensions: 5424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5073
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)