Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K16
(156 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 59 4e-09
sp|P41116|RL8_XENLA 60S ribosomal protein L8 59 4e-09
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 59 4e-09
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 59 4e-09
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 59 4e-09
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 59 4e-09
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 57 1e-08
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 56 2e-08
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 56 2e-08
sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4) 55 4e-08
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+AAR+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+AAR+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 58.9 bits (141), Expect = 4e-09
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIKTTKQ 130
NHQHIG PSTV R G+KVGL+AAR+TG +RG K +K TK+
Sbjct: 215 NHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGKPVKFTKE 257
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+AAR+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+AAR+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 58.9 bits (141), Expect = 4e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+AAR+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 57.4 bits (137), Expect = 1e-08
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQHIG PST+ R GRKVGL+A R+TG LRGTK ++
Sbjct: 215 NHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTK 109
NHQHIG STV R T PGRKVGL+AAR+TG +RG K
Sbjct: 215 NHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTK 109
NHQHIG STV R T PGRKVGL+AAR+TG +RG K
Sbjct: 215 NHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|P08093|RL2_SCHPO 60S ribosomal protein L2 (K5) (K37) (KD4)
Length = 253
Score = 55.5 bits (132), Expect = 4e-08
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +2
Query: 2 NHQHIGTPSTVSRHTVPGRKVGLVAARKTGLLRGTKVIK 118
NHQH+G +TV R + PG+KVGL+AAR+TGLLRG ++
Sbjct: 214 NHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAVE 252
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,419,255
Number of Sequences: 369166
Number of extensions: 311661
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 68,354,980
effective HSP length: 24
effective length of database: 63,921,340
effective search space used: 1725876180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)