Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K12
(392 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 113 2e-25
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 110 1e-24
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 108 4e-24
sp|Q9Y7L8|RS0A_SCHPO 40S ribosomal protein S0-A 107 9e-24
sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 ... 106 1e-23
sp|P46771|RSSA_STRPU 40S ribosomal protein SA (p40) (34/67 ... 106 1e-23
sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 ... 105 2e-23
sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kD... 105 2e-23
sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 pr... 105 2e-23
sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 ... 105 4e-23
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 113 bits (282), Expect = 2e-25
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = +3
Query: 3 IESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIE 182
+E+S+VNIPVIAF NTDS ++Y+DI IPCNNK SIGLMW+LLAREV R++G ISRS+E
Sbjct: 135 MEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVE 194
Query: 183 WDVKVDLFINRSVEEEDKQQ 242
W V VDLF R EE +K++
Sbjct: 195 WPVVVDLFFYRDPEEAEKEE 214
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 110 bits (274), Expect = 1e-24
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VNIPVIA CNTDS ++YVDI IPCNNK SIGLMW++L+REV R++G ISR + W
Sbjct: 136 EASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTW 195
Query: 186 DVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIGGEEAGFGPIGQPSQQLDD 341
++ DL+ R EE +K++ + + P + A + P GQP ++ D
Sbjct: 196 EIMCDLYFFRDPEEAEKEEQEARDRATAVKEEPAQPYA-EQWSDPVAVPPAGQPVAEVTD 254
Query: 342 W 344
W
Sbjct: 255 W 255
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 108 bits (270), Expect = 4e-24
Identities = 51/87 (58%), Positives = 63/87 (72%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VNIPVIA NTDS +KYVDI IPCNNK S+GLMW++LAREV R++G ISR + W
Sbjct: 136 EASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPW 195
Query: 186 DVKVDLFINRSVEEEDKQQDDENLPQE 266
+V VDLF R EE +K+ E E
Sbjct: 196 EVMVDLFFYRDPEEAEKEAQAEQAAAE 222
>sp|Q9Y7L8|RS0A_SCHPO 40S ribosomal protein S0-A
Length = 292
Score = 107 bits (267), Expect = 9e-24
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+SFVNIPVIA C+TDSI+ +VDI IP NNKG +SIGL+WYLLAREV R++G +SRS W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197
Query: 186 DVKVDLFINRSVEEEDKQQD 245
DV DL+ R EE +++++
Sbjct: 198 DVMPDLYFYRDPEEVEREEE 217
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
Length = 296
Score = 106 bits (265), Expect = 1e-23
Identities = 48/79 (60%), Positives = 61/79 (77%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VNIP IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W
Sbjct: 136 EASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195
Query: 186 DVKVDLFINRSVEEEDKQQ 242
+V DL+ R EE +K++
Sbjct: 196 EVMPDLYFYRDPEEIEKEE 214
>sp|P46771|RSSA_STRPU 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 264
Score = 106 bits (265), Expect = 1e-23
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 12/125 (9%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VNIPVIA CN+DS +++VDI IPCNNK SIGLMW++L+REV R++G ISR + W
Sbjct: 59 EASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTW 118
Query: 186 DVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIGGE----EAGFGPIGQPSQ 329
++ VDL+ R EE +K++ + + P + A G + AG P+G P
Sbjct: 119 EIMVDLYFFRDPEEAEKEEQEARDRAVAVKEEPAQPYAEQWGSDPVAVPAGGQPVGVP-- 176
Query: 330 QLDDW 344
+ DW
Sbjct: 177 DVTDW 181
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
carcinoma laminin-binding protein) (NEM/1CHD4)
(Multidrug resistance-associated protein MGr1-Ag)
Length = 295
Score = 105 bits (263), Expect = 2e-23
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W
Sbjct: 136 EASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195
Query: 186 DVKVDLFINRSVEEEDKQQ 242
+V DL+ R EE +K++
Sbjct: 196 EVMPDLYFYRDPEEIEKEE 214
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 105 bits (263), Expect = 2e-23
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W
Sbjct: 136 EASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195
Query: 186 DVKVDLFINRSVEEEDKQQ 242
+V DL+ R EE +K++
Sbjct: 196 EVMPDLYFYRDPEEIEKEE 214
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
Length = 295
Score = 105 bits (263), Expect = 2e-23
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W
Sbjct: 136 EASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195
Query: 186 DVKVDLFINRSVEEEDKQQ 242
+V DL+ R EE +K++
Sbjct: 196 EVMPDLYFYRDPEEIEKEE 214
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 105 bits (261), Expect = 4e-23
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +3
Query: 6 ESSFVNIPVIAFCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEW 185
E+S+VN+P IA CNTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W
Sbjct: 136 EASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPW 195
Query: 186 DVKVDLFINRSVEEEDKQQ 242
+V DL+ R EE +K++
Sbjct: 196 EVMPDLYFYRDPEEIEKEE 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,126,673
Number of Sequences: 369166
Number of extensions: 736832
Number of successful extensions: 2666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)