Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K11-2
(509 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49327|FAS_HUMAN Fatty acid synthase [Includes: [Acyl-ca... 29 5.6
sp|P39720|YAF1_YEAST Putative 118.2 kDa transcriptional reg... 29 5.6
>sp|P49327|FAS_HUMAN Fatty acid synthase [Includes: [Acyl-carrier-protein]
S-acetyltransferase ; [Acyl-carrier-protein]
S-malonyltransferase ; 3-oxoacyl-[acyl-carrier-protein]
synthase ; 3-oxoacyl-[acyl-carrier-protein] reductase ;
3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase ;
Enoyl-[acyl-carrier-protein] reductase ;
Oleoyl-[acyl-carrier-protein] hydrolase ]
Length = 2511
Score = 29.3 bits (64), Expect = 5.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 115 DVYLGGTCGNSNWRERIAIPLLQKAACSFYNPKMNNAEWSRKLLP 249
+V GG +S + E IA PLLQ+ PK +A W +P
Sbjct: 674 EVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIP 718
>sp|P39720|YAF1_YEAST Putative 118.2 kDa transcriptional regulatory protein in ACS1-GCV3
intergenic region
Length = 1062
Score = 29.3 bits (64), Expect = 5.6
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = -2
Query: 190 QLFVIMVLLFSLSNYYFHMYHLNTHRISGLRPLIVVQV*SVLDLVPLQLIATV*LQIDEM 11
QL +++ L +L+ Y+ +HL H I +R I + V +VPL+ +A +D+M
Sbjct: 601 QLALLLSDLDNLTMTYYGSFHL--HSIEFIREKIEIFVEENFPIVPLKSVAQDKSDLDDM 658
Query: 10 DII 2
++I
Sbjct: 659 NVI 661
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,909,324
Number of Sequences: 369166
Number of extensions: 982417
Number of successful extensions: 2466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)