Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K11-1
(296 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 112 2e-25
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 112 3e-25
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 112 3e-25
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 112 3e-25
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 111 6e-25
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha) 110 8e-25
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 110 1e-24
sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha)... 110 1e-24
sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha) 110 1e-24
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 110 1e-24
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 112 bits (281), Expect = 2e-25
Identities = 51/68 (75%), Positives = 62/68 (91%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+
Sbjct: 371 KFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 112 bits (279), Expect = 3e-25
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+
Sbjct: 371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 112 bits (279), Expect = 3e-25
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+
Sbjct: 371 KFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 112 bits (279), Expect = 3e-25
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+
Sbjct: 371 KFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 111 bits (277), Expect = 6e-25
Identities = 52/67 (77%), Positives = 61/67 (91%)
Frame = +3
Query: 6 FAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQ 185
F EL++KIDRRSGK +ED PK K+GDA +VR++PSKPMCVETF+EYPPLGRFAVRDM+Q
Sbjct: 370 FDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQ 429
Query: 186 TVAVGVI 206
TVAVGVI
Sbjct: 430 TVAVGVI 436
>sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 110 bits (276), Expect = 8e-25
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAELM KIDRRSGK+LE PK K+GDAG V+++P+KPM VETFSEYPPLGRFAVRDM+
Sbjct: 359 KFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMR 418
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 419 QTVAVGVI 426
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 110 bits (275), Expect = 1e-24
Identities = 52/68 (76%), Positives = 60/68 (88%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+
Sbjct: 371 KFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|P02994|EF1A_YEAST Elongation factor 1-alpha (EF-1-alpha) (Translation elongation
factor 1A) (Eukaryotic elongation factor 1A) (eEF1A)
Length = 458
Score = 110 bits (275), Expect = 1e-24
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = +3
Query: 6 FAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQ 185
F EL++K DRRSGK LED PK KSGDA LV+ VPSKPMCVE FSEYPPLGRFAVRDM+Q
Sbjct: 370 FDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQ 429
Query: 186 TVAVGVI 206
TVAVGVI
Sbjct: 430 TVAVGVI 436
>sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 110 bits (275), Expect = 1e-24
Identities = 53/68 (77%), Positives = 59/68 (86%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS YPPLGRFAVRDM+
Sbjct: 371 KFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 110 bits (274), Expect = 1e-24
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 3 EFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMK 182
+FAEL +KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+
Sbjct: 371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMR 430
Query: 183 QTVAVGVI 206
QTVAVGVI
Sbjct: 431 QTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,679,331
Number of Sequences: 369166
Number of extensions: 491061
Number of successful extensions: 1457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)