Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K06
(779 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 146 7e-35
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 144 2e-34
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 143 6e-34
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 143 6e-34
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 140 3e-33
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 140 3e-33
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 136 6e-32
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 136 7e-32
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 134 2e-31
sp|P07805|DCOR_TRYBB Ornithine decarboxylase (ODC) 127 3e-29
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 146 bits (368), Expect = 7e-35
Identities = 89/254 (35%), Positives = 126/254 (49%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++V+GVSFHVGSGC + D F + V V ++A ++GF +LDIGGGFP
Sbjct: 180 LLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 240 GSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAK 293
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
++ P SD + SN
Sbjct: 294 KTVWKEQP-----------------------------------GSDDEDESN-------- 310
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
E+ + Y +NDGVY SFNCI++DHA K + + + S+
Sbjct: 311 ---------EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSS 354
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 355 IWGPTCDGLDRIVE 368
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 144 bits (364), Expect = 2e-34
Identities = 86/250 (34%), Positives = 122/250 (48%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+ AK LS++V+GVSFHVGSGC + A+ + + V E+A + G+K +LDIGGGFP
Sbjct: 179 LLEMAKNLSVDVIGVSFHVGSGCTDSKAYTQAISDARLVFEMASEFGYKMWLLDIGGGFP 238
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G +++FEE+ +N LD YFPE + +IIAEPGRY+V A++L VI
Sbjct: 239 GTE------DSKIRFEEIAGVINPALDMYFPESSDVQIIAEPGRYYVASAFSLAVNVIAK 292
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
++ S+SD E ++
Sbjct: 293 KEVE-------------------------------------HSVSDDEENESS------- 308
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
K Y +NDGVY SFNC+VFDHA P P K+ + + + S+
Sbjct: 309 ----------KSIMYYVNDGVYGSFNCLVFDHAHPKPI-------LHKKPSPDQPLYTSS 351
Query: 737 IYGPTCDGFD 766
++GPTCDG D
Sbjct: 352 LWGPTCDGLD 361
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 143 bits (360), Expect = 6e-34
Identities = 87/254 (34%), Positives = 125/254 (49%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++V+GVSFHVGSGC + + F + V V ++ ++GF +LDIGGGFP
Sbjct: 180 LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 240 GSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAK 293
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
++ P SD + SN
Sbjct: 294 KTVWKEQP-----------------------------------GSDDEDESN-------- 310
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
E+ + Y +NDGVY SFNCI++DHA K + + + S+
Sbjct: 311 ---------EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSS 354
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 355 IWGPTCDGLDRIVE 368
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 143 bits (360), Expect = 6e-34
Identities = 85/254 (33%), Positives = 127/254 (50%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++V+GVSFHVGSGC + + F + + V ++ ++GF +LDIGGGFP
Sbjct: 177 LLERAKELNIDVIGVSFHVGSGCTDPETFVQALSDARCVFDMGTEVGFSMYLLDIGGGFP 236
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G +LKFEE+ +N LD YFP ++G ++IAEPGRY+V A+TL +
Sbjct: 237 GSEDT------KLKFEEITSVINPALDKYFPPDSGVRVIAEPGRYYVASAFTLAVNI--- 287
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
IA+ ++ SD + S+
Sbjct: 288 -----------------------------------IAKKIVSKGSDDEDESS-------- 304
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
E+ + Y +NDGVY SFNCI++DHA P K + + + S+
Sbjct: 305 ---------EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LPKRPKPDEKYYSSS 348
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 349 IWGPTCDGLDRIVE 362
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 140 bits (354), Expect = 3e-33
Identities = 86/254 (33%), Positives = 125/254 (49%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++V+GVSFHVGSGC + + F + V V ++ ++GF +LDIGGGFP
Sbjct: 180 LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 240 GSEDT------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAK 293
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
++ + + SD + SN
Sbjct: 294 KTV-----------------------------------WKEQTGSDDEDESN-------- 310
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
E+ Y +NDGVY SFNCI++DHA K + + + S+
Sbjct: 311 ---------EQTLMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSS 354
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 355 IWGPTCDGLDRIVE 368
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 140 bits (354), Expect = 3e-33
Identities = 88/254 (34%), Positives = 129/254 (50%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++++GVSFHVGSGC + + + V V ++ ++GF +LDIGGGFP
Sbjct: 180 LLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFNMHLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G V +LKFEE+ +N LD YFP ++G KIIAEPGRY+V ++TL +
Sbjct: 240 GSEDV------KLKFEEITSVINPALDKYFPADSGVKIIAEPGRYYVASSFTLAVNI--- 290
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
IA+ +M +++ S + E DK
Sbjct: 291 -----------------------------------IAKKVM--VNEQSGSDDEEDAANDK 313
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
+ Y +NDGVY SFNCI+FDHA P K+ + + + S+
Sbjct: 314 TLMYY-----------VNDGVYGSFNCILFDHAHVKPV-------LTKKPKPDEKFYSSS 355
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 356 IWGPTCDGLDRIVE 369
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 136 bits (343), Expect = 6e-32
Identities = 86/254 (33%), Positives = 124/254 (48%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL+++VVGVSFHVGSGC + + F + + V ++ ++GF +LDIGGGFP
Sbjct: 180 LLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 240 GSEDV------KLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII-A 292
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
+ L + D + SS+ + Y+ D
Sbjct: 293 KKIVLKEQTGS--------------DDEDESSEQTFMYYVND------------------ 320
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
GVY SFNCI++DHA P K + + + S+
Sbjct: 321 -------------------GVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSS 354
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 355 IWGPTCDGLDRIVE 368
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 136 bits (342), Expect = 7e-32
Identities = 86/254 (33%), Positives = 122/254 (48%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL ++V+GVSFHVGSGC + + F + + V ++ ++GF +LDIGGGFP
Sbjct: 180 LLERAKELDIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGGFP 239
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G V +LKFEE+ +N LD YFP ++G +IIAEPGRY+V A+TL +I
Sbjct: 240 GSEDV------KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNII-A 292
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
L L + D E S+ + Y+ D
Sbjct: 293 KKLVLKEQTGS--------------DDEEESTDRTFMYYVND------------------ 320
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
GVY SFNCI++DHA P K + + + S+
Sbjct: 321 -------------------GVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSS 354
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 355 IWGPTCDGLDRIVE 368
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 134 bits (338), Expect = 2e-31
Identities = 85/254 (33%), Positives = 119/254 (46%)
Frame = +2
Query: 17 LLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDIGGGFP 196
LL+RAKEL + +VGVSFHVGSGC + + F + + V ++ ++GF +LDIGGGFP
Sbjct: 170 LLERAKELDLAIVGVSFHVGSGCTDPETFVQAISDARCVFDMGAELGFNMYLLDIGGGFP 229
Query: 197 GLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVTQVIGV 376
G V +LKFEE+ +N LD YFP ++ IIAEPGRY+V A+TL +I
Sbjct: 230 GSEDV------KLKFEEITSVINPALDKYFPLDSEVTIIAEPGRYYVASAFTLAVNII-- 281
Query: 377 HSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAELRKPDK 556
+ GS D D+++
Sbjct: 282 -----------------------AKKIVSKEQTGS------DDEDDVND----------- 301
Query: 557 HQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVST 736
K Y +NDGVY SFNCI++DHA P K + + +
Sbjct: 302 ----------KTLMYYVNDGVYGSFNCILYDHAHVKPV-------LQKRPKPDDGCYSCS 344
Query: 737 IYGPTCDGFDCLIQ 778
I+GPTCDG D +++
Sbjct: 345 IWGPTCDGLDRIVE 358
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase (ODC)
Length = 423
Score = 127 bits (319), Expect = 3e-29
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 2/261 (0%)
Frame = +2
Query: 2 DEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVIYCSQVMELARKIGFKPTILDI 181
++ F+L++AK+L+++V GVSFHVGSG + F + + V ++ ++GF ILDI
Sbjct: 173 EDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDI 232
Query: 182 GGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKIIAEPGRYFVHGAYTLVT 361
GGGFPG LKFEE+ +N+ L+ +FP + I+AEPGRY+V A+TL
Sbjct: 233 GGGFPGTRDA------PLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAV 286
Query: 362 QVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAEYLMDSMSDISEFSNAEL 541
VI + ++T G+ AE SNA+
Sbjct: 287 NVIA----------------------KKVTPGVQT-DVGAHAE------------SNAQ- 310
Query: 542 RKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHA--KPAPFGIFDNEGYFKEVACE 715
+ Y +NDGVY SFNCI++DHA +P P +E
Sbjct: 311 ----------------SFMYYVNDGVYGSFNCILYDHAVVRPLP---------QREPIPN 345
Query: 716 TETFVSTIYGPTCDGFDCLIQ 778
+ + S+++GPTCDG D +++
Sbjct: 346 EKLYPSSVWGPTCDGLDQIVE 366
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,591,801
Number of Sequences: 369166
Number of extensions: 1834021
Number of successful extensions: 5053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4981
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)