Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K04
(683 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WWM9|CYGB_HUMAN Cytoglobin (Histoglobin) (HGb) (Stella... 47 4e-05
sp|P21197|GLB1_MORMR Globin I 46 1e-04
sp|Q9CX80|CYGB_MOUSE Cytoglobin (Histoglobin) (HGb) 45 2e-04
sp|Q921A4|CYGB_RAT Cytoglobin (Histoglobin) (HGb) (Stellate... 44 3e-04
sp|P02207|GLB_LAMFL Globin 44 5e-04
sp|P02208|GLB5_PETMA Globin V 43 7e-04
sp|P21199|GLB3_MORMR Globin III 42 0.001
sp|P21198|GLB2_MORMR Globin II 42 0.001
sp|P09967|GLB1_PETMA Globin I 42 0.001
sp|P13578|GLB3_TYLHE Extracellular globin IIB (Erythrocruorin) 42 0.002
>sp|Q8WWM9|CYGB_HUMAN Cytoglobin (Histoglobin) (HGb) (Stellate cell activation-associated
protein)
Length = 190
Score = 47.4 bits (111), Expect = 4e-05
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +3
Query: 81 LGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPD 260
+G + +FF FP F QF M E+ S +R RV+ LN+V E + PD
Sbjct: 41 VGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD 100
Query: 261 ELNDMLKHIGYVHKLR-DITRESFVDTKPVLEEIIVQYLKSDKAKETIR 404
+++ +L +G H L+ + F V+ E++ + SD ET R
Sbjct: 101 KVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQR 149
>sp|P21197|GLB1_MORMR Globin I
Length = 149
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 78 KLGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSP 257
K G D + KFFT P F +F G+T+ D++ S +R R+IN +N + +D
Sbjct: 32 KTGVDILVKFFTGTPAAQAFFPKFKGLTTADDLKQSSDVRWHAERIINAVNDAVKSMDDT 91
Query: 258 DELNDMLKHIGYVH 299
++++ LK + H
Sbjct: 92 EKMSMKLKELSIKH 105
>sp|Q9CX80|CYGB_MOUSE Cytoglobin (Histoglobin) (HGb)
Length = 190
Score = 45.1 bits (105), Expect = 2e-04
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 81 LGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPD 260
+G + +FF FP F QF M E+ S +R RV+ LN+V E + PD
Sbjct: 41 VGVAILVRFFVNFPSAKQYFSQFRHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD 100
Query: 261 ELNDMLKHIGYVHKLR-DITRESFVDTKPVLEEIIVQYLKSDKAKET 398
+++ +L +G H L+ + F V+ E+I + +D ET
Sbjct: 101 KVSSVLALVGKAHALKHKVEPMYFKILSGVILEVIAEEFANDFPVET 147
>sp|Q921A4|CYGB_RAT Cytoglobin (Histoglobin) (HGb) (Stellate cell activation-associated
protein)
Length = 190
Score = 44.3 bits (103), Expect = 3e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 81 LGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPD 260
+G + +FF FP F QF M E+ S +R RV+ LN+V E + PD
Sbjct: 41 VGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPD 100
Query: 261 ELNDMLKHIGYVHKLR-DITRESFVDTKPVLEEIIVQYLKSDKAKET 398
+++ +L +G H L+ + F V+ ++I + +D ET
Sbjct: 101 KVSSVLALVGKAHALKHKVEPMYFKILSGVILDVIAEEFANDFPVET 147
>sp|P02207|GLB_LAMFL Globin
Length = 149
Score = 43.5 bits (101), Expect = 5e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 84 GQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPDE 263
G D + KFFT P F +F GMTS D++ S +R R+IN +N +D ++
Sbjct: 34 GVDILVKFFTSTPAAQEFFPKFKGMTSADQLKKSADVRWHAERIINAVNDAVASMDDTEK 93
Query: 264 LNDMLKHIGYVH 299
++ L+ + H
Sbjct: 94 MSMKLRDLSGKH 105
>sp|P02208|GLB5_PETMA Globin V
Length = 149
Score = 43.1 bits (100), Expect = 7e-04
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 42 WTEITSTTDKKIKLGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVIN 221
W + ST + G D + KFFT P F +F G+T+ D++ S +R R+IN
Sbjct: 23 WAPVYSTYETS---GVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIIN 79
Query: 222 TLNSVFELVDSPDELNDMLKHIGYVH 299
+N +D ++++ L+ + H
Sbjct: 80 AVNDAVASMDDTEKMSMKLRDLSGKH 105
>sp|P21199|GLB3_MORMR Globin III
Length = 149
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 90 DFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPDELN 269
D + KFFT P F +F G+T+ D++ S +R R+IN +N + +D ++++
Sbjct: 36 DILVKFFTGTPAAQAFFPKFKGLTTADDLKKSSDVRWHAERIINAVNDAVKSMDDTEKMS 95
Query: 270 DMLKHIGYVH 299
LK + H
Sbjct: 96 MKLKELSNKH 105
>sp|P21198|GLB2_MORMR Globin II
Length = 149
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +3
Query: 78 KLGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSP 257
K G D + KFFT P F +F G+T+ D + S +R R+IN +N + +D
Sbjct: 32 KNGVDILVKFFTGTPAAQAFFPKFKGLTTADALKKSSDVRWHAERIINAVNDAVKSMDDT 91
Query: 258 DELNDMLKHIGYVH 299
++++ L+ + H
Sbjct: 92 EKMSMKLQELSVKH 105
>sp|P09967|GLB1_PETMA Globin I
Length = 149
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +3
Query: 84 GQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPMRALCLRVINTLNSVFELVDSPDE 263
G D + KFFT P F +F G+TS D++ S +R R+IN +N +D ++
Sbjct: 34 GVDILIKFFTSNPAAQAFFPKFQGLTSADQLKKSMDVRWHAERIINAVNDAVVAMDDTEK 93
Query: 264 LNDMLKHIGYVH 299
++ L+ + H
Sbjct: 94 MSLKLRELSGKH 105
>sp|P13578|GLB3_TYLHE Extracellular globin IIB (Erythrocruorin)
Length = 148
Score = 42.0 bits (97), Expect = 0.002
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +3
Query: 21 KHIFLHEWTEITST--TDKKIKLGQDFMRKFFTVFPEFVPIFKQFDGMTSMDEIIASHPM 194
+H L W I S T +++ +GQ ++ F + P +F G ++D+ +
Sbjct: 9 RHEVLDNWKGIWSAEFTGRRVAIGQAIFQELFALDPNAKGVF----GRVNVDKP-SEADW 63
Query: 195 RALCLRVINTLNSVFELVDSPDELNDMLKHIGYVHKLRDITRESFVD 335
+A +RVIN L+ L++ P L + LKH+ H+ R + + D
Sbjct: 64 KAHVIRVINGLDLAVNLLEDPKALQEELKHLARQHRERSGVKAVYFD 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,144,915
Number of Sequences: 369166
Number of extensions: 1137112
Number of successful extensions: 3124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3124
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)