Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J24
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 159 3e-39
sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 159 3e-39
sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiq... 157 1e-38
sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fol... 156 2e-38
sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-f... 156 2e-38
sp|Q9CMX6|Y674_PASMU Hypothetical protein PM0674 precursor 33 0.32
sp|Q61824|ADA12_MOUSE ADAM 12 precursor (A disintegrin and ... 28 7.9
>sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 159 bits (402), Expect = 3e-39
Identities = 68/90 (75%), Positives = 81/90 (90%)
Frame = +1
Query: 1 EMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLWSRNVPKFG 180
++ KYEFD+ FDIP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW+RNVPKFG
Sbjct: 74 DLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFG 133
Query: 181 IGHAMALGLGPWLAVEIPDMISKGIIKDKD 270
+ H MALGLGPWLAVEIPD+I KG+I+ K+
Sbjct: 134 LAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 159 bits (402), Expect = 3e-39
Identities = 68/90 (75%), Positives = 81/90 (90%)
Frame = +1
Query: 1 EMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLWSRNVPKFG 180
++ KYEFD+ FDIP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW+RNVPKFG
Sbjct: 74 DLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFG 133
Query: 181 IGHAMALGLGPWLAVEIPDMISKGIIKDKD 270
+ H MALGLGPWLAVEIPD+I KG+I+ K+
Sbjct: 134 LAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiquitin-fold
modifier-conjugating enzyme)
Length = 162
Score = 157 bits (396), Expect = 1e-38
Identities = 70/88 (79%), Positives = 77/88 (87%)
Frame = +1
Query: 4 MKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLWSRNVPKFGI 183
M KYEFDV FDIP+ YP T PEI LPELDGKTAKMYRGGKICL+EHFKPLW+RN PKFGI
Sbjct: 74 MVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLWARNTPKFGI 133
Query: 184 GHAMALGLGPWLAVEIPDMISKGIIKDK 267
HA ALGLGPW+AVEIPD+I KG+I+ K
Sbjct: 134 AHAFALGLGPWMAVEIPDLIEKGLIQPK 161
>sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 156 bits (395), Expect = 2e-38
Identities = 66/87 (75%), Positives = 79/87 (90%)
Frame = +1
Query: 10 KYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLWSRNVPKFGIGH 189
KYEFD+ F+IP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW+RNVPKFG+ H
Sbjct: 77 KYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAH 136
Query: 190 AMALGLGPWLAVEIPDMISKGIIKDKD 270
MALGLGPWLAVE+PD+I KG+I+ K+
Sbjct: 137 LMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 156 bits (395), Expect = 2e-38
Identities = 66/87 (75%), Positives = 79/87 (90%)
Frame = +1
Query: 10 KYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLWSRNVPKFGIGH 189
KYEFD+ F+IP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW+RNVPKFG+ H
Sbjct: 77 KYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAH 136
Query: 190 AMALGLGPWLAVEIPDMISKGIIKDKD 270
MALGLGPWLAVE+PD+I KG+I+ K+
Sbjct: 137 LMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q9CMX6|Y674_PASMU Hypothetical protein PM0674 precursor
Length = 230
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 MKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAK-MYRGGKICLTE 138
+K +E+ N D +AY ST PE++ + +G+ AK Y+ GK+ +
Sbjct: 57 LKPFEYIHNQDHYIAYLSTQPELIKVQKNGQLAKFFYQAGKVSFVQ 102
>sp|Q61824|ADA12_MOUSE ADAM 12 precursor (A disintegrin and metalloproteinase domain 12)
(Meltrin alpha)
Length = 903
Score = 28.5 bits (62), Expect = 7.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 305 IL*TKMKTNYSESLSLIMPLEIISG--ISTANHGPKPSAMACPIPNFGTFRDQRGLKCSV 132
+L T KT E L + P SG + A+H P + P+F T +D+ LKC
Sbjct: 735 LLFTHKKTTM-EKLRCVHPSRTPSGPHLGQAHHTPGKGLLMNRAPHFNTPKDRHSLKCQN 793
Query: 131 KHIFPP 114
I P
Sbjct: 794 MDISRP 799
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,682,652
Number of Sequences: 369166
Number of extensions: 1092579
Number of successful extensions: 2608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)