Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J23
(831 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8) 333 5e-91
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 332 6e-91
sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8) 332 6e-91
sp|Q91060|TBA_NOTVI Tubulin alpha chain 332 8e-91
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 332 1e-90
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 331 1e-90
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 331 1e-90
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 331 2e-90
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 331 2e-90
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 331 2e-90
>sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 333 bits (853), Expect = 5e-91
Identities = 151/267 (56%), Positives = 202/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ ++Y K+ K + AI P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+PI
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPI 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
VS +A HEQLS EIT S F+ +SQMV GKYMACC+ YRG+V PKDVN A+ I
Sbjct: 276 VSAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 332 bits (852), Expect = 6e-91
Identities = 150/267 (56%), Positives = 202/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ ++Y K+ K + AI P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+PI
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPI 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT S F+ +SQMV GKYMACC+ YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 332 bits (852), Expect = 6e-91
Identities = 150/267 (56%), Positives = 202/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ ++Y K+ K + AI P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+PI
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPI 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT S F+ +SQMV GKYMACC+ YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q91060|TBA_NOTVI Tubulin alpha chain
Length = 450
Score = 332 bits (851), Expect = 8e-91
Identities = 149/267 (55%), Positives = 202/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + AI P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RP+Y NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPTAVPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 332 bits (850), Expect = 1e-90
Identities = 149/267 (55%), Positives = 200/267 (74%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + AI P+ ++TAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR++ Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPTAVPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFTEAR 422
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 331 bits (849), Expect = 1e-90
Identities = 148/267 (55%), Positives = 201/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + +I P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 331 bits (849), Expect = 1e-90
Identities = 147/267 (55%), Positives = 201/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + A+ P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR++ Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV + GKYMACC+ YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 331 bits (848), Expect = 2e-90
Identities = 148/267 (55%), Positives = 201/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + +I P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 331 bits (848), Expect = 2e-90
Identities = 148/267 (55%), Positives = 201/267 (75%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + +I P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 156 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 215
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR+++Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 216 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 275
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 276 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 335
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 336 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 395
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAR 422
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 331 bits (848), Expect = 2e-90
Identities = 148/267 (55%), Positives = 200/267 (74%)
Frame = +1
Query: 1 RIGVEYTKRPKFQVAIVPSNHMSTAVVEPYNSLLSLNASTEHAEICNMTDNEAVYQLLTS 180
R+ V+Y K+ K + +I P+ +STAVVEPYNS+L+ + + EH++ M DNEA+Y +
Sbjct: 117 RLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 176
Query: 181 TLDISRPTYNNLNRVLAQVFSSLTVSLRYESLLNADFDQIITNLVPYPRIHYPVCNYSPI 360
LDI RPTY NLNR++ Q+ SS+T SLR++ LN D + TNLVPYPRIH+P+ Y+P+
Sbjct: 177 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 236
Query: 361 VSVRRAEHEQLSTHEITRSIFDDHSQMVSIKMSDGKYMACCLQYRGNVAPKDVNQAVFEI 540
+S +A HEQLS EIT + F+ +QMV GKYMACCL YRG+V PKDVN A+ I
Sbjct: 237 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 296
Query: 541 KRRTDVKFVEWCPTGFKLGINCQPPTAVPGSELAQTLRSVTMLSNTTAVSQIWATIGRKF 720
K + ++FV+WCPTGFK+GIN QPPT VPG +LA+ R+V MLSNTTA+++ WA + KF
Sbjct: 297 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 356
Query: 721 DVLFSKRSFVHWYVGEGMEEGEFNEAK 801
D++++KR+FVHWYVGEGMEEGEF+EA+
Sbjct: 357 DLMYAKRAFVHWYVGEGMEEGEFSEAR 383
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,336,608
Number of Sequences: 369166
Number of extensions: 1666372
Number of successful extensions: 5042
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4794
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)