Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J22
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6X632|GPR75_MOUSE Probable G-protein coupled receptor 75 35 0.22
sp|Q8D2X6|IF2_WIGBR Translation initiation factor IF-2 35 0.22
sp|O95800|GPR75_HUMAN Probable G-protein coupled receptor 75 33 0.49
sp|O35568|FBLN3_RAT EGF-containing fibulin-like extracellul... 33 0.64
sp|Q58318|Y908_METJA Hypothetical protein MJ0908 32 1.4
sp|Q8BPB5|FBLN3_MOUSE EGF-containing fibulin-like extracell... 31 2.4
sp|Q8XJ27|SYH_CLOPE Histidyl-tRNA synthetase (Histidine--tR... 31 2.4
sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-ac... 31 3.2
sp|P47533|P69_MYCGE Transport system permease protein p69 31 3.2
sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 pr... 30 4.1
>sp|Q6X632|GPR75_MOUSE Probable G-protein coupled receptor 75
Length = 540
Score = 34.7 bits (78), Expect = 0.22
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = -1
Query: 243 FFDASFR*SRFTLSTKFFIMNITGFIELFIISVTIPIKDLVLF 115
FFD SFR +F + F I+N++ F +LFI VT P+ VLF
Sbjct: 67 FFDPSFR--KFRTNFDFMILNLS-FCDLFICGVTAPMFTFVLF 106
>sp|Q8D2X6|IF2_WIGBR Translation initiation factor IF-2
Length = 841
Score = 34.7 bits (78), Expect = 0.22
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Frame = +1
Query: 46 INIKRKVWLTCLKFL--------NEIDAECDKKYEILDRNCDGNYKQLYKTCN---IHYE 192
I +++K +L C L N ID KK I D N Y +L K N I++E
Sbjct: 84 IEVRKKKYLKCDSSLLFKDKIVKNNIDKTFCKK-NIKDLNKTKKYVELSKNINEREINFE 142
Query: 193 K------LSGKCKARLSKTCIKKYGKLNKDCIDAYDKIDVSCDKEYSKLD 324
K + K K ++SK IKK K+NK+ ++ Y K + + + +KL+
Sbjct: 143 KKLIKEPILDKSKLKISKNLIKKNVKINKN-LNIYKKNEFKQNLKKNKLN 191
>sp|O95800|GPR75_HUMAN Probable G-protein coupled receptor 75
Length = 540
Score = 33.5 bits (75), Expect = 0.49
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -1
Query: 243 FFDASFR*SRFTLSTKFFIMNITGFIELFIISVTIPIKDLVLF 115
FFD +FR +F + F I+N++ F +LFI VT P+ VLF
Sbjct: 67 FFDPAFR--KFRTNFDFMILNLS-FCDLFICGVTAPMFTFVLF 106
>sp|O35568|FBLN3_RAT EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3) (T16 protein)
Length = 493
Score = 33.1 bits (74), Expect = 0.64
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 142 CDGNYKQL-YKTCNIHYEKLSGKCKARLSKTCIKKYGKLNKDCIDAYDKIDVSC-DKEYS 315
C Y+Q + C E SG RL + CI G C+ Y K C D +
Sbjct: 159 CAAGYEQSEHNVCQDIDECTSGTHNCRLDQVCINLRGSFTCHCLPGYQKRGEQCVDIDEC 218
Query: 316 KLDPYC 333
+ PYC
Sbjct: 219 SVPPYC 224
>sp|Q58318|Y908_METJA Hypothetical protein MJ0908
Length = 1232
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +1
Query: 148 GNYKQLYKTCNIHYEKLSGKCKARLSKTCIKKYG--KLNKDCIDA----YDKIDVSCDKE 309
G+ +L K+ + +YE + + K L K +KK KL++D +D + D + +K
Sbjct: 615 GDLVELEKSIDDYYETENKEKKEFLKKEILKKIKELKLDEDLLDGKVIDEEINDENFEKL 674
Query: 310 YSKLDPYCDTLYNQQAKCGVETM 378
+K+ Y +TL N+Q G+ M
Sbjct: 675 LNKIHDYLETLKNRQINDGLHIM 697
>sp|Q8BPB5|FBLN3_MOUSE EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3)
Length = 493
Score = 31.2 bits (69), Expect = 2.4
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +1
Query: 142 CDGNYKQL-YKTCNIHYEKLSGKCKARLSKTCIKKYGKLNKDCIDAYDKIDVSC-DKEYS 315
C Y+Q + C E SG R + CI G C+ Y K C D +
Sbjct: 159 CAAGYEQSEHNVCQDIDECTSGTHNCRTDQVCINLRGSFTCQCLPGYQKRGEQCVDIDEC 218
Query: 316 KLDPYC 333
+ PYC
Sbjct: 219 TVPPYC 224
>sp|Q8XJ27|SYH_CLOPE Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
Length = 415
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +1
Query: 106 ECDKKY-EILDRNCDGNYKQLYKTCNIHYEKLSGK---CKARLSKTCIKKYGKLNKDCID 273
+C K+ E L + NY L +TC +EK + CK + K +K+ +
Sbjct: 171 KCRAKFNEALKQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSI------ 224
Query: 274 AYDKIDVSCDKEYSKLDPYCDTL 342
D I C +SKL Y D +
Sbjct: 225 -LDYICEECSDHFSKLKAYLDVM 246
>sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-acetylglucosaminyltransferase B)
Length = 453
Score = 30.8 bits (68), Expect = 3.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Frame = +1
Query: 13 MGVAKTKKEELINIKR----------KVWLTCLKFLNEIDAECDKKYEILDRNCDGNYKQ 162
+G + +K++LI + K W + N D +C KKY I D NC +K
Sbjct: 384 LGYERKEKDDLIQDAKFIHFSDYPLSKPWF----YSNADDIQCSKKYSISDENCQ-LWKS 438
Query: 163 LYK 171
LYK
Sbjct: 439 LYK 441
>sp|P47533|P69_MYCGE Transport system permease protein p69
Length = 543
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -1
Query: 216 RFTLSTKFFIM--NITGFIELFIISVTIPIKDLVLFVTLGINLI*EF*TSQPHLSLNIYQ 43
RF T FF+ + GFI + S K ++ L I LI + L +
Sbjct: 72 RFLAQTAFFVTGGSFLGFIFAILFSYWTAFKIQPFYIALPIRLI--------TIVLRAFP 123
Query: 42 FLFFGFCYSHTFN 4
L FGF +S+ FN
Sbjct: 124 VLLFGFLFSNLFN 136
>sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 precursor
Length = 4007
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Frame = +1
Query: 106 ECDKKYEILDRNCDGNYKQLYKTCNIHYEKLSGKCKARLSKTCIKKYGKLNKDCIDAYDK 285
+C + +LD C C Y G C TC + +G L DCI Y
Sbjct: 731 DCGPSHVLLDGQC-------LSQCPDGYFHQEGSC-TECHPTCRQCHGPLESDCISCYPH 782
Query: 286 IDV-------SC-DKEYSKLDPYCDTLYNQQAKCGVE 372
I + SC ++++ L YC ++ C +
Sbjct: 783 ISLTNGNCRTSCREEQFLNLVGYCADCHHLCQHCAAD 819
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,101,434
Number of Sequences: 369166
Number of extensions: 1214014
Number of successful extensions: 3712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3707
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)