Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J04
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor 127 6e-29
sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor 126 8e-29
sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor 124 4e-28
sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor 122 2e-27
sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor ... 119 1e-26
sp||P12105_3 [Segment 3 of 3] Collagen alpha 1(III) chain p... 118 2e-26
sp|P02467|CO1A2_CHICK Collagen alpha 2(I) chain precursor 116 8e-26
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 116 1e-25
sp|P08121|CO3A1_MOUSE Collagen alpha 1(III) chain precursor 114 3e-25
sp|P13941|CO3A1_RAT Collagen alpha 1(III) chain precursor 113 7e-25
>sp|P02465|CO1A2_BOVIN Collagen alpha 2(I) chain precursor
Length = 1364
Score = 127 bits (318), Expect = 6e-29
Identities = 94/302 (31%), Positives = 139/302 (46%), Gaps = 26/302 (8%)
Frame = +1
Query: 7 GDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXX----------IMAMQLRSP 156
G G PGA+GP G+ G +GS A Q RSP
Sbjct: 1064 GRIGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYEFGFDGDFYRADQPRSP 1123
Query: 157 T--KGVVYGDDPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPN 321
T + Y D L NN I+ P+G+++ PARTC+ L +P G YWIDPN
Sbjct: 1124 TSLRPKDYEVDATLKSL--NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPN 1181
Query: 322 GGRTSDAVKVFCKISEEKTCIKPLSKEISIRSW-NSPITKGHTWLKSLLN-SDEIQYSIP 495
G T DA+KV+C S +TCI+ ++I +++W + K H W+ +N + +Y++
Sbjct: 1182 QGCTMDAIKVYCDFSTGETCIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVE 1241
Query: 496 N-------GQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDT-IIKM 651
QLAF+++ ++ A+Q IT+ C+N +EE N A L +D ++
Sbjct: 1242 GVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAE 1301
Query: 652 TQSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEV 828
S+ YTV+ D C + ++IIE K + S LPI DI L I V
Sbjct: 1302 GNSRFTYTVLVDGCSKKTNEWQKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPV 1361
Query: 829 CF 834
CF
Sbjct: 1362 CF 1363
Score = 31.2 bits (69), Expect = 4.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSN 69
PRG+ G+PG GP G G G+N
Sbjct: 279 PRGEVGLPGLSGPVGPPGNPGAN 301
Score = 30.8 bits (68), Expect = 5.8
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 4 RGDPGIPGAIGPTGLSGKKGSN 69
RGD G PG GP GL G KG N
Sbjct: 1003 RGDKGEPGDKGPRGLPGLKGHN 1024
Score = 30.4 bits (67), Expect = 7.5
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKG 63
PRG PG PG IGP G G G
Sbjct: 447 PRGFPGSPGNIGPAGKEGPVG 467
>sp|Q28668|CO1A2_RABIT Collagen alpha 2(I) chain precursor
Length = 526
Score = 126 bits (317), Expect = 8e-29
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 16/294 (5%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPT--KGVVY 174
P G PG PG GP G SG A Q RSP + Y
Sbjct: 248 PAGPPGPPGPPGPPGASG--------------GGYDFGYDGDFYRADQPRSPPSLRPKDY 293
Query: 175 GDDPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAV 345
D L NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+
Sbjct: 294 EVDATLKSL--NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAI 351
Query: 346 KVFCKISEEKTCIKPLSKEISIRSW-NSPITKGHTWLKSLLN-SDEIQYSIPN------- 498
KV+C S +TCI+ + IS+++W S K H WL +N + +Y++
Sbjct: 352 KVYCDFSTGETCIRAQPENISVKNWYKSSKAKKHVWLGETINGGTQFEYNVEGVTSKEMA 411
Query: 499 GQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDT-IIKMTQSKLKYT 675
QLAF+++ ++ A+Q IT+ C+N +EE N A L +D ++ S+ YT
Sbjct: 412 TQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLNKAVILQGSNDVELVAEGNSRFTYT 471
Query: 676 VIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVCF 834
V+ D C + ++IIE K + S LP DI F + + VCF
Sbjct: 472 VLVDGCTKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFYVDVGPVCF 525
Score = 30.4 bits (67), Expect = 7.5
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 4 RGDPGIPGAIGPTGLSGKKGSN 69
RGD G PG GP GL G KG N
Sbjct: 165 RGDKGEPGDKGPRGLPGIKGHN 186
>sp|O46392|CO1A2_CANFA Collagen alpha 2(I) chain precursor
Length = 1366
Score = 124 bits (311), Expect = 4e-28
Identities = 95/295 (32%), Positives = 136/295 (46%), Gaps = 17/295 (5%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPT--KGVVY 174
P G PG PG GP G SG A Q RSP + Y
Sbjct: 1088 PAGPPGPPGPPGPPGPSG--------------GGYDFGYEGDFYRADQPRSPPSLRPKDY 1133
Query: 175 GDDPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAV 345
D L NN I+ P+G+++ PARTC+ L +P G YWIDPN G T DA+
Sbjct: 1134 EVDATLKSL--NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAI 1191
Query: 346 KVFCKISEEKTCIKPLSKEISIRSW--NSPITKGHTWLKSLLN-SDEIQYSIPN------ 498
KV+C S +TCI+ + I ++W NS + K H WL +N + +Y++
Sbjct: 1192 KVYCDFSTGETCIRAQPENIPAKNWYRNSKVKK-HIWLGETINGGTQFEYNVEGVTTKEM 1250
Query: 499 -GQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDT-IIKMTQSKLKY 672
QLAF+++ ++ A+Q IT+ C+N +EE N A L +D ++ S+ Y
Sbjct: 1251 ATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTY 1310
Query: 673 TVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVCF 834
TV+ D C + ++IIE K + S LPI DI F + + VCF
Sbjct: 1311 TVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEFRVDVGPVCF 1365
Score = 31.6 bits (70), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSN 69
PRG+ G+PG GP G G G+N
Sbjct: 281 PRGEVGLPGVSGPVGPPGNPGAN 303
Score = 31.2 bits (69), Expect = 4.4
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 4 RGDPGIPGAIGPTGLSGKKGSN 69
RGD G PG GP GL G KG N
Sbjct: 1005 RGDKGEPGEKGPRGLPGLKGHN 1026
Score = 30.8 bits (68), Expect = 5.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKG 63
PRG PG PG +GP G G G
Sbjct: 449 PRGFPGAPGNVGPAGKEGPMG 469
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
Length = 369
Score = 122 bits (305), Expect = 2e-27
Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 20/298 (6%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGS----NXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGV 168
PRG G PG GP G G G I M+ G+
Sbjct: 71 PRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGL 130
Query: 169 VYGDDPAAAELLGNN----AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTS 336
D A L N +I++P+G+K+ PARTC+ + +P G+YWIDPN G T
Sbjct: 131 RQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTL 190
Query: 337 DAVKVFCKISEEKTCIKPLSKEISIRSWNSPITKG--HTWLKSLLN--------SDEIQY 486
DA+KVFC + +TC+ P I ++W + TK H W +N + +
Sbjct: 191 DAIKVFCNMETGETCVYPTPSSIPRKNWWTSKTKDKKHVWFAETINGGFHFSYGDENLSP 250
Query: 487 SIPNGQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT-QSK 663
+ + Q+ FL++ S +Q +T+ C+N +EE N A + +D I+ S+
Sbjct: 251 NTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSR 310
Query: 664 LKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVCF 834
Y+V++D C +++IE + S LPI DI FG+ I VCF
Sbjct: 311 FTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 368
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1418
Score = 119 bits (298), Expect = 1e-26
Identities = 86/294 (29%), Positives = 127/294 (43%), Gaps = 16/294 (5%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGD 180
P G PG PG GP G G + M+ G+ D
Sbjct: 1129 PAGPPGNPGPPGPPGPPGP-----GIDMSAFAGLGpreKGPDPLQYMRADQAAGGLRQHD 1183
Query: 181 DPAAAELLGNN----AIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVK 348
A L N +I++P+G+++ PARTC+ L +P G+YWIDPN G T DA+K
Sbjct: 1184 AEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMK 1243
Query: 349 VFCKISEEKTCIKPLSKEISIRSWNSPIT--KGHTWLKSLLN--------SDEIQYSIPN 498
VFC + +TC+ P + ++W S + K H W +N D + + N
Sbjct: 1244 VFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTAN 1303
Query: 499 GQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT-QSKLKYT 675
Q+ FL++ S +Q IT+ C+N +E N A + +D I+ S+ YT
Sbjct: 1304 VQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYT 1363
Query: 676 VIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVCF 834
+KD C +++IE + S LPI DI FG+ I VCF
Sbjct: 1364 ALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1417
Score = 34.7 bits (78), Expect = 0.40
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSN 69
PRG+PG PG+ GP G SG G++
Sbjct: 322 PRGEPGTPGSPGPAGASGNPGTD 344
Score = 31.2 bits (69), Expect = 4.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGS 66
P+G G PG GPTG++G KG+
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGA 817
Score = 30.4 bits (67), Expect = 7.5
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKG 63
PRG PG PG GP G SG G
Sbjct: 649 PRGLPGTPGTDGPKGASGPAG 669
Score = 30.0 bits (66), Expect = 9.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 7 GDPGIPGAIGPTGLSGKKGSN 69
G G PG GP+GL+G KG+N
Sbjct: 456 GPKGAPGERGPSGLAGPKGAN 476
>sp||P12105_3 [Segment 3 of 3] Collagen alpha 1(III) chain precursor
Length = 340
Score = 118 bits (296), Expect = 2e-26
Identities = 89/303 (29%), Positives = 136/303 (44%), Gaps = 25/303 (8%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGD 180
PRG+ G G GP G G G + + A + G Y D
Sbjct: 44 PRGNRGESGPAGPPGQPGLPGPS-------GPPGPCCGGGVASLGAGEKGPVGYGYEYRD 96
Query: 181 DPAAAEL-LG---------NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPN 321
+P E+ LG NN I+N P G+++ PAR C+ L +P + GEYWIDPN
Sbjct: 97 EPKENEINLGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPN 156
Query: 322 GGRTSDAVKVFCKISEEKTCIKPLSKEISIRSWNSPITKG--HTWL-KSLLNSDEIQYSI 492
G DA+KV+C + +TC+ + ++W + + G H W +S+ + Y
Sbjct: 157 QGCKMDAIKVYCNMETGETCLSANPATVPRKNWWTTESSGKKHVWFGESMKGGFQFSYGD 216
Query: 493 PN-------GQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKM 651
P+ QLAFL+I S A+Q IT+ C+N N+ N A +L++ +T IK
Sbjct: 217 PDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMNQASGNVKKALKLMSSVETDIKA 276
Query: 652 T-QSKLKYTVIKDECQYSKSSEAESIIELKHLASL-LPIRDIGXXXXXXXXXXFGLTIEE 825
SK Y V++D C +++ E + ++ LP+ DI FG+ +
Sbjct: 277 EGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGP 336
Query: 826 VCF 834
VCF
Sbjct: 337 VCF 339
>sp|P02467|CO1A2_CHICK Collagen alpha 2(I) chain precursor
Length = 1362
Score = 116 bits (291), Expect = 8e-26
Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 25/301 (8%)
Frame = +1
Query: 7 GDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXX-----IMAMQLRSPTKGVV 171
G G+PG IGP G+ G GS A R+ +
Sbjct: 1064 GRNGLPGPIGPAGVRGSHGSQGPAGPPGPPGPPGPPGPNGGGYEVGFDAEYYRADQPSLR 1123
Query: 172 YGDDPAAAELLG-NNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSD 339
D A L NN I+ P+G+K+ PARTC+ L +P G YWIDPN G T+D
Sbjct: 1124 PKDYEVDATLKTLNNQIETLLTPEGSKKNPARTCRDLRLSHPEWSSGFYWIDPNQGCTAD 1183
Query: 340 AVKVFCKISEEKTCIKPLSKEISIRSW---NSPITKGHTWLKSLLN-SDEIQYSIPNG-- 501
A++ +C + +TCI ++I ++W +P K H W +N + +Y NG
Sbjct: 1184 AIRAYCDFATGETCIHASLEDIPTKTWYVSKNPKDKKHIWFGETINGGTQFEY---NGEG 1240
Query: 502 --------QLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT- 654
QLAF+++ ++ A+Q IT+ C+N +EE N A L +D ++
Sbjct: 1241 VTTKDMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELRAEG 1300
Query: 655 QSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVC 831
S+ ++V+ D C + ++IIE + + S LPI DI FGL I VC
Sbjct: 1301 NSRFTFSVLVDGCSKKNNKWGKTIIEYRTNKPSRLPILDIAPLDIGGADQEFGLHIGPVC 1360
Query: 832 F 834
F
Sbjct: 1361 F 1361
Score = 31.6 bits (70), Expect = 3.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSN 69
PRG+ G+PG+ GP G G G+N
Sbjct: 279 PRGEIGLPGSSGPVGPPGNPGAN 301
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 116 bits (290), Expect = 1e-25
Identities = 87/292 (29%), Positives = 128/292 (43%), Gaps = 14/292 (4%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGD 180
P G G PG +GP G G G R+ Y
Sbjct: 1070 PVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQSGGYDEYRADQPSFRAKD----YEV 1125
Query: 181 DPAAAELLGNNAIKN---PQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGGRTSDAVKV 351
D L N+ I+N P+G+K+ PARTC+ + +P+ G YWIDPN G +DA+K
Sbjct: 1126 DATIKSL--NSQIENLLTPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCIADAIKA 1183
Query: 352 FCKISEEKTCIKPLSKEISIRSW-NSPITKGHTWLKSLLN-SDEIQYSIPN-------GQ 504
+C S TCI P + I+ ++W S K H W +N E Y+ Q
Sbjct: 1184 YCDFSTGHTCIHPHPESIARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQ 1243
Query: 505 LAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT-QSKLKYTVI 681
LAF+++ ++ ATQ IT+ C+N + E N A L +D ++ S+ + V+
Sbjct: 1244 LAFMRLLANQATQNITYHCKNSVAYMDGENGNLKKAVLLQGSNDVELRAEGNSRFTFNVL 1303
Query: 682 KDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVCF 834
+D C ++++IE + + S LPI DI FGL I VCF
Sbjct: 1304 EDGCTRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGEADQEFGLDIGPVCF 1355
Score = 32.7 bits (73), Expect = 1.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 4 RGDPGIPGAIGPTGLSGKKGSN 69
RG+PGI GA+GP G G G+N
Sbjct: 276 RGEPGINGAVGPVGPVGNPGNN 297
>sp|P08121|CO3A1_MOUSE Collagen alpha 1(III) chain precursor
Length = 1464
Score = 114 bits (286), Expect = 3e-25
Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 25/301 (8%)
Frame = +1
Query: 7 GDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGDDP 186
G PG PG GP G G G +S YGDDP
Sbjct: 1175 GSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGE------------KSGGFSPYYGDDP 1222
Query: 187 A-----AAELLGN--------NAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGG 327
E++ + ++ +P G+++ PAR C+ L +P + GEYW+DPN G
Sbjct: 1223 MDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQG 1282
Query: 328 RTSDAVKVFCKISEEKTCIKPLSKEISIRSW--NSPITKGHTWLKSLLNS--------DE 477
DA+KVFC + +TCI + + W +S K H W +N +
Sbjct: 1283 CKMDAIKVFCNMETGETCINASPMTVPRKHWWTDSGAEKKHVWFGESMNGGFQFSYGPPD 1342
Query: 478 IQYSIPNGQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT- 654
+ + + QLAFL++ S A+Q IT+ C+N ++ N + +L+ ++ K
Sbjct: 1343 LPEDVVDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKAEG 1402
Query: 655 QSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVC 831
SK YTV++D C ++++ E + A LPI DI FG+ I VC
Sbjct: 1403 NSKFTYTVLEDGCTKHTGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVC 1462
Query: 832 F 834
F
Sbjct: 1463 F 1463
Score = 33.1 bits (74), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 1 PRGDPGIPGAIGPTGLSGKKGSN 69
P G PG PGA+GP G +GK G +
Sbjct: 210 PAGPPGPPGALGPAGPAGKDGES 232
>sp|P13941|CO3A1_RAT Collagen alpha 1(III) chain precursor
Length = 636
Score = 113 bits (283), Expect = 7e-25
Identities = 82/301 (27%), Positives = 129/301 (42%), Gaps = 25/301 (8%)
Frame = +1
Query: 7 GDPGIPGAIGPTGLSGKKGSNXXXXXXXXXXXXXXXXXXXXIMAMQLRSPTKGVVYGDDP 186
G PG PG GP G G G +S YGDDP
Sbjct: 348 GSPGHPGQPGPPGPPGAPGPCCGGGAAIAGVGGE-------------KSGGFSPYYGDDP 394
Query: 187 A-----AAELLGN--------NAIKNPQGTKEVPARTCKQLSSENPNIPDGEYWIDPNGG 327
E++ + ++ +P G+++ PAR C+ L +P + GEYW+DPN G
Sbjct: 395 MDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQG 454
Query: 328 RTSDAVKVFCKISEEKTCIKPLSKEISIRSW--NSPITKGHTWLKSLLN--------SDE 477
DA+KVFC + +TCI + + W ++ K H W +N + +
Sbjct: 455 CKMDAIKVFCNMETGETCINASPMTVPRKHWWTDAGAEKKHVWFGESMNGGFQFSYGNPD 514
Query: 478 IQYSIPNGQLAFLKIYSDAATQRITFACENHPIIGNEEKVNKVMAPRLLADDDTIIKMT- 654
+ + + QLAFL++ S A+Q IT+ C+N ++ N + +L+ ++ K
Sbjct: 515 LPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDQANGNVKKSLKLMGSNEGEFKAEG 574
Query: 655 QSKLKYTVIKDECQYSKSSEAESIIELK-HLASLLPIRDIGXXXXXXXXXXFGLTIEEVC 831
SK YTV++D C ++++ E + A LPI DI FG+ I VC
Sbjct: 575 NSKFTYTVLEDGCTKHTGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVC 634
Query: 832 F 834
F
Sbjct: 635 F 635
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,996,075
Number of Sequences: 369166
Number of extensions: 1913792
Number of successful extensions: 12666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12295
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)