Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J03
(489 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18937|NU2M_CHICK NADH-ubiquinone oxidoreductase chain 2... 32 1.0
sp|Q6BHK4|GPI11_DEBHA Glycosylphosphatidylinositol anchor b... 30 2.3
sp|P25103|NK1R_HUMAN Substance-P receptor (SPR) (NK-1 recep... 30 3.0
sp|Q5DUB3|NK1R_CANFA Substance-P receptor (SPR) (NK-1 recep... 30 3.0
sp|P30548|NK1R_MOUSE Substance-P receptor (SPR) (NK-1 recep... 29 5.1
sp|P26850|NU6M_MARPO NADH-ubiquinone oxidoreductase chain 6... 29 5.1
sp|P14600|NK1R_RAT Substance-P receptor (SPR) (NK-1 recepto... 29 6.7
sp|P27113|LYAM2_RABIT E-selectin precursor (Endothelial leu... 28 8.8
>sp|P18937|NU2M_CHICK NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 346
Score = 31.6 bits (70), Expect = 1.0
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -3
Query: 223 GSMSVKASFQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRYQVLTVHITLIELLEKF 44
G M + S+ P LT L + + M ST++L++A I++++ L + T +L
Sbjct: 188 GWMIMIISYNPQLTILTFILY----TIMTSTVFLSLAQIKVLKLSTLLISWTKTPMLNAT 243
Query: 43 LMMT-------PPTTSLNP 8
+M+T PP T P
Sbjct: 244 VMLTLLSLAGLPPLTGFMP 262
>sp|Q6BHK4|GPI11_DEBHA Glycosylphosphatidylinositol anchor biosynthesis protein 11
Length = 236
Score = 30.4 bits (67), Expect = 2.3
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Frame = -3
Query: 373 ILYSGLHPCHGTTIIIYGAIYVFVRFYNIFYLHILPGLTILARG--------------MP 236
+L GL+ G T IYG + + +++ L +L G I R +P
Sbjct: 49 LLIFGLYK-FGLTNDIYGVMLKGI--FSLIPLQLLYGYLITTRSEKEKKTKSHNNSENVP 105
Query: 235 LLIAGSMSVKASFQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRYQVLTVHITLIEL 56
LL+AG + + L +I + +S + T L+I + LI Y +L ++ +L
Sbjct: 106 LLLAGGIVISLVLSVPLFVALILLGAPLASHLKETYLLSIHLSLLIFYPLLVLYKYDYKL 165
Query: 55 LEKFL 41
L KFL
Sbjct: 166 LVKFL 170
>sp|P25103|NK1R_HUMAN Substance-P receptor (SPR) (NK-1 receptor) (NK-1R) (Tachykinin
receptor 1)
Length = 407
Score = 30.0 bits (66), Expect = 3.0
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = -3
Query: 379 NKILYSGLHPCHGTTIIIYGAIYVFVRFYNIFYLHILPGLTILARGMPLLIAGSMSVKAS 200
NKI H C T++IY F+ I Y + + G+T+ A +P + + S
Sbjct: 189 NKIYEKVYHIC--VTVLIY-----FLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVS 241
Query: 199 FQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRY----QVLTVHITLIELLEKFLMMT 32
+ + ++I +VC + C WL I L+ Y L I + L +L M+
Sbjct: 242 AKRKVVKMMIVVVCTFAIC-----WLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMS 296
Query: 31 PPTTSLNPI 5
+T NPI
Sbjct: 297 --STMYNPI 303
>sp|Q5DUB3|NK1R_CANFA Substance-P receptor (SPR) (NK-1 receptor) (NK-1R) (Tachykinin
receptor 1)
Length = 407
Score = 30.0 bits (66), Expect = 3.0
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = -3
Query: 379 NKILYSGLHPCHGTTIIIYGAIYVFVRFYNIFYLHILPGLTILARGMPLLIAGSMSVKAS 200
NKI H C T++IY F+ I Y + + G+T+ A +P + + S
Sbjct: 189 NKIYEKVYHIC--VTVLIY-----FLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVS 241
Query: 199 FQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRY----QVLTVHITLIELLEKFLMMT 32
+ + ++I +VC + C WL I L+ Y L I + L +L M+
Sbjct: 242 AKRKVVKMMIVVVCTFAIC-----WLPFHIFFLLPYINPDLYLEKFIQQVYLAIMWLAMS 296
Query: 31 PPTTSLNPI 5
+T NPI
Sbjct: 297 --STMYNPI 303
>sp|P30548|NK1R_MOUSE Substance-P receptor (SPR) (NK-1 receptor) (NK-1R) (Tachykinin
receptor 1)
Length = 407
Score = 29.3 bits (64), Expect = 5.1
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Frame = -3
Query: 379 NKILYSGLHPCHGTTIIIYGAIYVFVRFYNIFYLHILPGLTILARGMPLLIAGSMSVKAS 200
N+ H C T++IY F+ I Y + + G+T+ A +P + + S
Sbjct: 189 NRTYEKAYHIC--VTVLIY-----FLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVS 241
Query: 199 FQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRY----QVLTVHITLIELLEKFLMMT 32
+ + ++I +VC + C WL I L+ Y L I + L +L M+
Sbjct: 242 AKRKVVKMMIVVVCTFAIC-----WLPFHIFFLLPYINPDLYLKKFIQQVYLASMWLAMS 296
Query: 31 PPTTSLNPI 5
+T NPI
Sbjct: 297 --STMYNPI 303
>sp|P26850|NU6M_MARPO NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
6)
Length = 199
Score = 29.3 bits (64), Expect = 5.1
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Frame = -3
Query: 232 LIAGSMSVKASFQPNLTYLIIAMVCNSSSCM-------HSTIWLTI---AIIELIRYQVL 83
L++G+M ++A + +I + CN+S + + I+L + AI L + V+
Sbjct: 12 LVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVVM 71
Query: 82 TVHITLIELLEKFLMMTP 29
+HI + E+ E L P
Sbjct: 72 MLHIRIEEIHENVLRYLP 89
>sp|P14600|NK1R_RAT Substance-P receptor (SPR) (NK-1 receptor) (NK-1R) (Tachykinin
receptor 1)
Length = 407
Score = 28.9 bits (63), Expect = 6.7
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Frame = -3
Query: 379 NKILYSGLHPCHGTTIIIYGAIYVFVRFYNIFYLHILPGLTILARGMPLLIAGSMSVKAS 200
N+ H C T++IY F+ I Y + + G+T+ A +P + + S
Sbjct: 189 NRTYEKAYHIC--VTVLIY-----FLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVS 241
Query: 199 FQPNLTYLIIAMVCNSSSCMHSTIWLTIAIIELIRY----QVLTVHITLIELLEKFLMMT 32
+ + ++I +VC + C WL + L+ Y L I + L +L M+
Sbjct: 242 AKRKVVKMMIVVVCTFAIC-----WLPFHVFFLLPYINPDLYLKKFIQQVYLASMWLAMS 296
Query: 31 PPTTSLNPI 5
+T NPI
Sbjct: 297 --STMYNPI 303
>sp|P27113|LYAM2_RABIT E-selectin precursor (Endothelial leukocyte adhesion molecule 1)
(ELAM-1) (Leukocyte-endothelial cell adhesion molecule
2) (LECAM2)
Length = 551
Score = 28.5 bits (62), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 59 LNEGYVNCEHLISNQFNY-SNCQPNCR 136
L +G+V C H + +F Y S+C NCR
Sbjct: 375 LEDGFVKCTHPHTGEFTYKSSCTFNCR 401
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,614,420
Number of Sequences: 369166
Number of extensions: 1038230
Number of successful extensions: 2406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)