Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I23
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O08918|CCNG2_MOUSE Cyclin-G2 37 0.050
sp|Q16589|CCNG2_HUMAN Cyclin-G2 33 0.94
sp|Q08683|APC5_YEAST Anaphase promoting complex subunit 5 31 4.7
>sp|O08918|CCNG2_MOUSE Cyclin-G2
Length = 344
Score = 37.4 bits (85), Expect = 0.050
Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = +1
Query: 58 NLANLHRCGASGQDLERMQQIIIKKLQNSMPLVTIFNFIELID----------PQAIDDQ 207
++ + +C + D++RM++II +KL + T NF+ L + +
Sbjct: 124 DVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHAIVFCHTSERKEILSLD 183
Query: 208 KFVRILEVALTKFAIFWHRPSRVAVACLIAYYQQNQDIQQISMFQQICDVIKEDWDLIKY 387
K L+ + RPS +A+ L + + ++ + + + +K Y
Sbjct: 184 KLEAQLKACNCRVVFSKARPSVLALCLLNLEIETIKSVELLEILLLVKKHLKLSDTEFFY 243
Query: 388 LSILISDQYSIINSKRSIESSRNHLLWVISRKS 486
L+S + +S R + L+W++SR++
Sbjct: 244 WRELVSKCLAEYSSPRCCKPDLKKLVWIVSRRT 276
>sp|Q16589|CCNG2_HUMAN Cyclin-G2
Length = 344
Score = 33.1 bits (74), Expect = 0.94
Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Frame = +1
Query: 58 NLANLHRCGASGQDLERMQQIIIKKLQNSMPLVTIFNFIELID----------PQAIDDQ 207
++ + +C + D++RM++II +KL + T NF+ L + +
Sbjct: 124 DVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTSERKEILSLD 183
Query: 208 KFVRILEVALTKFAIFWHRPSRVAVACLIAYYQQNQDIQQISMFQQICDVIKEDWDLIKY 387
K L+ + +PS +A+ L + + ++ + + + K + Y
Sbjct: 184 KLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDTEFFY 243
Query: 388 LSILISDQYSIINSKRSIESSRNHLLWVISRKS 486
L+S + +S + L+W++SR++
Sbjct: 244 WRELVSKCLAEYSSPECCKPDLKKLVWIVSRRT 276
>sp|Q08683|APC5_YEAST Anaphase promoting complex subunit 5
Length = 685
Score = 30.8 bits (68), Expect = 4.7
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 307 QNQDIQQISMFQQICDVIKEDWDLIKYLSILISDQYSIINSKRSIESSRNHLLWVISRKS 486
QN Q +FQ + + W + Y SI SD Y SK S S RN+ +I++
Sbjct: 456 QNVPSQNFDLFQSLVSYEVKFWKELGYESI--SDVYEKFLSKTSSSSLRNYDSSIINQDI 513
Query: 487 LIIFKQL 507
+ FK L
Sbjct: 514 KVAFKAL 520
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,876,953
Number of Sequences: 369166
Number of extensions: 1464911
Number of successful extensions: 3078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3076
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)