Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I15
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40492|YIJ7_YEAST Hypothetical 59.9 kDa protein in SGA1-... 41 0.001
sp|Q96G75|U2508_HUMAN Protein UNQ2508/PRO5996 32 0.45
sp|Q91YQ7|U2508_MOUSE Protein UNQ2508/PRO5996 homolog 32 0.58
sp|Q12508|RMD5_YEAST Sporulation protein RMD5 (Glucose-indu... 30 2.9
sp|Q9PL60|Y248_CHLMU Hypothetical protein TC0248 30 2.9
sp|Q8PIW4|SYL_XANAC Leucyl-tRNA synthetase (Leucine--tRNA l... 29 5.0
sp|Q5QY18|GLNE_IDILO Glutamate-ammonia-ligase adenylyltrans... 29 5.0
sp|Q92YE0|ADEC4_RHIME Adenine deaminase 4 (Adenase 4) (Aden... 28 6.5
sp|P43117|PF2R_MOUSE Prostaglandin F2-alpha receptor (Prost... 28 8.4
sp|Q68FU5|CI085_RAT Protein C9orf85 homolog 28 8.4
>sp|P40492|YIJ7_YEAST Hypothetical 59.9 kDa protein in SGA1-KTR7 intergenic region
Length = 516
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/155 (23%), Positives = 53/155 (34%), Gaps = 48/155 (30%)
Frame = +2
Query: 14 FILQFYSFY--HEPSVMSLMIKTGIAVRKTENCYKPE----------------------- 118
F+ FYS Y + + + + GI+ KT +C P
Sbjct: 363 FLSDFYSMYGISQNDPLLIYLSLGISSLKTRDCLHPSDDENGNQETETATTAEKEVEDLQ 422
Query: 119 ------MKRKECVVCIDRVNKISVDIPAARHDHSILICWKTGLEMNEDNPPIAFPNGYVY 280
+KRK C VC + I+ +P A H S L PI PNG VY
Sbjct: 423 LFTLHSLKRKNCPVCSETFKPITQALPFAHHIQSQLF-----------ENPILLPNGNVY 471
Query: 281 STKAIPEL-----------------IDPTDNKVVC 334
+K + +L +DP D K+ C
Sbjct: 472 DSKKLKKLAKTLKKQNLISLNPGQIMDPVDMKIFC 506
>sp|Q96G75|U2508_HUMAN Protein UNQ2508/PRO5996
Length = 393
Score = 32.3 bits (72), Expect = 0.45
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Frame = +2
Query: 50 SVMSLMIKTGIAVRKTENCY--------KPEMKRKECVVCIDRVNKISVDIPAARHD--H 199
S++ L +++ ++V C K +++++C + +++ ++I H
Sbjct: 274 SLLGLSVESPLSVSFASGCVALPVLMNIKAVIEQRQCTGVWNHKDELPIEIELGMKCWYH 333
Query: 200 SILICWKTGLEMNEDNPPIAFPNGYVYSTKAIPELIDPTDNKVVCP 337
S+ C + ++ NPPI G+V S A+ +LI+ K+ CP
Sbjct: 334 SVFACPILRQQTSDSNPPIKLICGHVISRDALNKLIN--GGKLKCP 377
>sp|Q91YQ7|U2508_MOUSE Protein UNQ2508/PRO5996 homolog
Length = 393
Score = 32.0 bits (71), Expect = 0.58
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Frame = +2
Query: 50 SVMSLMIKTGIAVRKTENCY--------KPEMKRKECVVCIDRVNKISVDIPAARHD--H 199
S++ L +++ ++V C K +++++C +++ ++I H
Sbjct: 274 SLLGLSVESPLSVSFASGCVALPVLMNIKAVIEQRQCTGVWSHKDELPIEIELGMKCWYH 333
Query: 200 SILICWKTGLEMNEDNPPIAFPNGYVYSTKAIPELIDPTDNKVVCP 337
S+ C + ++ NPPI G+V S A+ +LI+ K+ CP
Sbjct: 334 SVFACPILRQQTSDSNPPIKLICGHVISRDALNKLIN--GGKLKCP 377
>sp|Q12508|RMD5_YEAST Sporulation protein RMD5 (Glucose-induced degradation protein 2)
Length = 421
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 191 HDHSILICWKTGLEMNEDNPPIAFPNGYVYSTKAIPELIDPTDNKVVCPRSKCRCKESEL 370
H H I IC E +NPP + ++ S KA+ L CP S
Sbjct: 354 HFHPIFICPVLKEETTTENPPYSLACHHIISKKALDRLSKNGTITFKCPYCPVNTSMSST 413
Query: 371 QKVYIV 388
+KV V
Sbjct: 414 KKVRFV 419
>sp|Q9PL60|Y248_CHLMU Hypothetical protein TC0248
Length = 601
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Frame = +2
Query: 149 DRVNKISVDIPAARH----DHSILICWKTG-LEMNEDNPPIAF----PNGYVYSTKAIPE 301
D + +D+ AA + H +L CWK G +E++ P F P+ V TK I
Sbjct: 424 DNMEGYPIDLQAAEYLKSFAHQVLACWKNGDIELSTPIPLFGFEKIHPHPRVQYTKPICV 483
Query: 302 LIDPTD 319
LI+ D
Sbjct: 484 LINEQD 489
>sp|Q8PIW4|SYL_XANAC Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 880
Score = 28.9 bits (63), Expect = 5.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 203 ILICWKTG-LEMNEDNPPIAFPNGYVYSTKAIPELIDPTDNKVVCP 337
++ C K G + + ED P+ P +S P DPT + CP
Sbjct: 452 VIYCAKCGAVPVPEDQLPVVLPENVEFSGTGSPIKTDPTWRQTTCP 497
>sp|Q5QY18|GLNE_IDILO Glutamate-ammonia-ligase adenylyltransferase
([Glutamate--ammonia-ligase] adenylyltransferase)
(Glutamine-synthetase adenylyltransferase) (ATase)
Length = 948
Score = 28.9 bits (63), Expect = 5.0
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = -3
Query: 398 KIIKRYKLSAIRFLYICILISDKRLCYQ*DRSVRGSPWCCKRIHLETLLVDYLRSFQDQF 219
+++ K R YI +L + Q + SPW +++ L +L+D L Q +
Sbjct: 531 RLLSIIKAVMSRTAYIELLAENPGAREQLCKLCMASPWISEQLALHPILLDELIDPQQLY 590
Query: 218 SNKSRLNDHVLQREYLLRFC*LDL 147
S + + REYL+R DL
Sbjct: 591 SLPESKDYAAVLREYLMRIPEQDL 614
>sp|Q92YE0|ADEC4_RHIME Adenine deaminase 4 (Adenase 4) (Adenine aminase 4)
Length = 600
Score = 28.5 bits (62), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 245 NPPIAFPNGYVYSTKAIPELIDPTDNKVVC 334
N P+AF +G+ + AI P DN ++C
Sbjct: 452 NRPVAFVSGFNLKSGAIASSTAPDDNNIIC 481
>sp|P43117|PF2R_MOUSE Prostaglandin F2-alpha receptor (Prostanoid FP receptor) (PGF
receptor) (PGF2 alpha receptor)
Length = 366
Score = 28.1 bits (61), Expect = 8.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 180 GISTEILLTRSIQTTHSFLFISGL*QFSVFLTAIPVL 70
G++ I + I + H + +SG+ F+VF+ +P+L
Sbjct: 136 GVTNPIFHSTKITSKHVKMILSGVCMFAVFVAVLPIL 172
>sp|Q68FU5|CI085_RAT Protein C9orf85 homolog
Length = 155
Score = 28.1 bits (61), Expect = 8.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 107 YKPEMKRKECVVCIDRVNKISVDIPAARHDHSILICWKTGLE 232
YKP K K+CV C+ + K S I + +C K G E
Sbjct: 61 YKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKE 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,935,839
Number of Sequences: 369166
Number of extensions: 897850
Number of successful extensions: 2233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)