Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I08
(552 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BW30|CG38_HUMAN Protein CGI-38 82 1e-15
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 80 4e-15
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 76 6e-14
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 75 1e-13
sp|P59282|P25B_HUMAN Protein p25-beta 74 2e-13
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 73 4e-13
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 65 1e-10
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 64 2e-10
sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase... 33 0.61
sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF... 32 1.4
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 81.6 bits (200), Expect = 1e-15
Identities = 49/125 (39%), Positives = 67/125 (53%)
Frame = +2
Query: 35 DIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHG 214
DI F K G + + ++Y +F + +E + + DA+ +L + PA G
Sbjct: 56 DIVFSKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQL---VAGKEPANVG 112
Query: 215 TTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAG 394
T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AG
Sbjct: 113 VTKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAG 168
Query: 395 TYDKK 409
TYD K
Sbjct: 169 TYDAK 173
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 79.7 bits (195), Expect = 4e-15
Identities = 49/125 (39%), Positives = 66/125 (52%)
Frame = +2
Query: 35 DIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHG 214
DI F K + + ++Y +F + +E + + DA+ +L I PA G
Sbjct: 56 DIVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQL---IAGKEPANIG 112
Query: 215 TTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAG 394
T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AG
Sbjct: 113 VTKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAG 168
Query: 395 TYDKK 409
TYD K
Sbjct: 169 TYDAK 173
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 75.9 bits (185), Expect = 6e-14
Identities = 48/125 (38%), Positives = 70/125 (56%)
Frame = +2
Query: 35 DIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHG 214
DI F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 96 DIVFSKIKGKSCRTITFEQFQEALEELAKKRF---KDKSSEEAVREVHRLIEGRAPVISG 152
Query: 215 TTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAG 394
T + +RLTD +TG+HKERFD ++GKGKG GR L E+ GYV GYK AG
Sbjct: 153 VTKAVSSPTVSRLTDTSKFTGSHKERFD-QSGKGKGKAGRVDLVDES---GYVPGYKHAG 208
Query: 395 TYDKK 409
TYD+K
Sbjct: 209 TYDQK 213
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 74.7 bits (182), Expect = 1e-13
Identities = 48/125 (38%), Positives = 69/125 (55%)
Frame = +2
Query: 35 DIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHG 214
DI F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 97 DIVFSKIKGKSCRTITFEQFQEALEELAKKRF---KDKSSEEAVREVHRLIEGKAPIISG 153
Query: 215 TTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAG 394
T + +RLTD +TG+HKERFD +GKGKG GR L E+ GYV GYK AG
Sbjct: 154 VTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGKAGRVDLVDES---GYVSGYKHAG 209
Query: 395 TYDKK 409
TYD+K
Sbjct: 210 TYDQK 214
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/70 (57%), Positives = 44/70 (62%)
Frame = +2
Query: 200 PAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGG 379
PA G T + A RLTD YTG HKE FD E+GKGKGI GRE + GYV G
Sbjct: 103 PATTGATKATTVGAVDRLTDTSKYTGTHKELFD-ESGKGKGIAGREEMTDNT---GYVSG 158
Query: 380 YKGAGTYDKK 409
YKG+GTYDKK
Sbjct: 159 YKGSGTYDKK 168
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 73.2 bits (178), Expect = 4e-13
Identities = 47/125 (37%), Positives = 69/125 (55%)
Frame = +2
Query: 35 DIQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHG 214
DI F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 96 DIVFSKIKGKSCRTITFEQFKEALEELAKKRF---KDKSAEEAVREVHKLIEGKAPIISG 152
Query: 215 TTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAG 394
T + +RLTD +TG+HKERFD +G+GKG GR L E+ GYV GYK AG
Sbjct: 153 VTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGRAGRVDLVDES---GYVPGYKHAG 208
Query: 395 TYDKK 409
TYD+K
Sbjct: 209 TYDQK 213
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 65.1 bits (157), Expect = 1e-10
Identities = 40/83 (48%), Positives = 47/83 (56%)
Frame = +2
Query: 158 DAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGRE 337
DA+ E K+ +P+ G +A +RLTD YTGAHKERFDAE GKGKG GR
Sbjct: 100 DAITEKLAKL--EAPSVGGAAKANAAGVYSRLTDHTKYTGAHKERFDAE-GKGKGKSGR- 155
Query: 338 YLAGENAQQGYVGGYKGAGTYDK 406
A GYVG YK +YDK
Sbjct: 156 --ADTTENTGYVGAYKNKDSYDK 176
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 64.3 bits (155), Expect = 2e-10
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 164 VQELKTKICQ-GSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREY 340
+ E+K K+ G+P + A AA RLTD YTG+HKERFDA +GKGKGI GR
Sbjct: 113 LSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDA-SGKGKGIAGRRN 171
Query: 341 LAGENAQQGYVGGYKGAGTYD 403
+ + GYV GY+ TYD
Sbjct: 172 VVDGS---GYVSGYQHKDTYD 189
>sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 245
Score = 32.7 bits (73), Expect = 0.61
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 260 HLSNEQLPHQQKL-RLYHGRQDYLDRF*FSILVLRLHKPNFLHSYKLQ 120
H + EQ H+QKL R YH R D LDR+ L F+ SYK Q
Sbjct: 199 HANIEQWRHEQKLIRTYHKRPDLLDRY-----PLTEDDEKFIESYKKQ 241
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7176
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 241 CRISRNSGCTMAGRTTLTDFSFQFLYCVFISQISCTHISFSHWSF 107
CR++ + C M+GR +LT S+Q C + ++ + + +SF
Sbjct: 3392 CRVTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSF 3436
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,666,945
Number of Sequences: 369166
Number of extensions: 1077232
Number of successful extensions: 3523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3508
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)