Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H06
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scrambla... 35 0.070
sp|Q02308|HLES_DROME Hairless protein 30 1.3
sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceo... 30 1.7
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 29 2.9
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 29 3.8
sp|O16005|OPSD_SEPOF Rhodopsin 29 3.8
sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation fac... 28 5.0
sp|Q95L87|STF1_MACEU Steroidogenic factor 1 (STF-1) (SF-1) 28 5.0
sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 28 6.5
sp|Q09472|EP300_HUMAN E1A-associated protein p300 28 8.5
>sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 (PL scramblase 1) (Ca(2+)-dependent
phospholipid scramblase 1) (Erythrocyte phospholipid
scramblase) (MmTRA1b)
Length = 318
Score = 34.7 bits (78), Expect = 0.070
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 85 PPAQCTYPQGQTVYPPPPIGNSDYQRAAYPV 177
PP YP Q YPPPP G+S A +PV
Sbjct: 33 PPGYSGYPGPQVSYPPPPAGHSGPGPAGFPV 63
>sp|Q02308|HLES_DROME Hairless protein
Length = 1077
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 66 PGSNILSTSPVHISTRPNRISSS 134
PGS+ STSP +ST+P R++SS
Sbjct: 640 PGSSSSSTSPATLSTQPTRLNSS 662
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 475
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 43 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRAAYP----VYPTN 189
P A V Q +PPA +PQ V+P PP G +P V+P+N
Sbjct: 392 PPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPPPGVHPAAPGVHPQPPGVHPSN 444
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 34 VAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPP 138
V P + V Q +PPA +PQ V+PP P
Sbjct: 375 VHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAP 409
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 43 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPP 138
PAA V Q +PPA +PQ V+P PP
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPP 412
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 16 QRRGRVVAQPAAVTV-ISQDQTYYPPAQCTYPQGQTVYPPPPIGNS 150
Q RG V A A T I+ T YPP + T PPPP+G +
Sbjct: 145 QGRGTVAAAAVAATASIAGAPTQYPPGRGT--------PPPPVGRA 182
>sp|O16005|OPSD_SEPOF Rhodopsin
Length = 464
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +1
Query: 46 AAVTVISQDQTYYPPAQCTYPQG---QTVYPPPPIGNSDYQRAAYPVYP 183
A + + Q Q YPP PQG YPPPP Y YP P
Sbjct: 375 AMMQKMQQQQAAYPPQGAYPPQGGYPPQGYPPPP-AQGGYPPQGYPPPP 422
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1)
(eIF-4G1) (eIF-4G 1) (p220)
Length = 1600
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 43 PAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDY--QRAAYPVYP 183
PAA + Q P+Q +YP Q Y P G S Y YPV P
Sbjct: 76 PAAHVYPAGSQVMMIPSQISYPASQGAYYIPGQGRSTYVVPTQQYPVQP 124
>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 (STF-1) (SF-1)
Length = 463
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 73 QTYYPPAQCTYPQGQTVYPPPPIG-NSDYQRAAY 171
QT YP A +P + + P PP G DY+R Y
Sbjct: 131 QTDYPLAPALHPGAKGLAPAPPAGPPGDYERGPY 164
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
Length = 769
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/50 (40%), Positives = 21/50 (42%)
Frame = +1
Query: 16 QRRGRVVAQPAAVTVISQDQTYYPPAQCTYPQGQTVYPPPPIGNSDYQRA 165
Q G V QP A T PP Q PQ PPP G SDY +A
Sbjct: 644 QPPGPVPGQPPAPTA--------PPVQGEPPQ------PPPTGQSDYTKA 679
>sp|Q09472|EP300_HUMAN E1A-associated protein p300
Length = 2414
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 40 QPAAVTVISQDQTYYPPAQCTYPQGQTVYPPP 135
QP A T+ + T PPA PQ Q ++PPP
Sbjct: 853 QPPATTIPAPVPT--PPAMPPGPQSQALHPPP 882
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,127,931
Number of Sequences: 369166
Number of extensions: 641041
Number of successful extensions: 2240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2225
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)