Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H02
(641 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm 64 3e-10
sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (... 64 3e-10
sp|P29675|SF3_HELAN Pollen-specific protein SF3 49 8e-06
sp|Q8BML1|MICA2_MOUSE Protein MICAL-2 43 8e-04
sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3 43 8e-04
sp|O94851|MICA2_HUMAN Protein MICAL-2 42 0.001
sp|P50238|CRIP1_HUMAN Cysteine-rich protein 1 (Cysteine-ric... 42 0.002
sp|Q56K04|CRIP1_BOVIN Cysteine-rich protein 1 42 0.002
sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1)... 41 0.003
sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1)... 41 0.003
>sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm
Length = 759
Score = 64.3 bits (155), Expect = 3e-10
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +3
Query: 3 IFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 140
+FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 409 VFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 454
>sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (mEPLIN)
Length = 753
Score = 64.3 bits (155), Expect = 3e-10
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +3
Query: 3 IFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 140
+FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 407 VFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
>sp|P29675|SF3_HELAN Pollen-specific protein SF3
Length = 219
Score = 49.3 bits (116), Expect = 8e-06
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDDNIENEILATNDI 185
+H+ CF+C +S N+ + G+ YC H+++LFKK+G Y +++ +E + A
Sbjct: 130 YHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE--VEETVAA---- 183
Query: 186 SDVLTDELPAPDTTKNILAKFRDLQTGGNSN 278
PA T+N + + Q N
Sbjct: 184 --------PAESETQNTETQNAETQNADTQN 206
Score = 48.5 bits (114), Expect = 1e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 3 IFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDD 149
++HK CFRC C + L NF+ G YC H+ +LFK+ G ++ D
Sbjct: 30 VYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFD 78
>sp|Q8BML1|MICA2_MOUSE Protein MICAL-2
Length = 960
Score = 42.7 bits (99), Expect = 8e-04
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRYDEIDDNIENE 164
FH+ CFRC+ C L ++F + GK YC PH+V K+R R E++ E E
Sbjct: 773 FHQECFRCSVCSATLRLAAYAFDCDEGKFYCKPHFVHCKTSSKQRKRRAELNQQREEE 830
>sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3
Length = 335
Score = 42.7 bits (99), Expect = 8e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 3 IFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 104
++HK CF+CT C L+ N+ +PYC PHY
Sbjct: 26 VWHKQCFKCTVCGMTLNMKNYKGYDKRPYCDPHY 59
>sp|O94851|MICA2_HUMAN Protein MICAL-2
Length = 1124
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRYDEIDDNIENE 164
FH+ CFRC+ C L ++F + GK YC PH++ K+R R E+ E E
Sbjct: 1022 FHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRRAELKQQREEE 1079
>sp|P50238|CRIP1_HUMAN Cysteine-rich protein 1 (Cysteine-rich intestinal protein) (CRIP)
(Cysteine-rich heart protein) (hCRHP)
Length = 77
Score = 41.6 bits (96), Expect = 0.002
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSFNHGKPYCT-PHYVELFKKRG 128
+H+ C +C KC L++G + + GKPYC P Y +F +G
Sbjct: 24 WHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKG 65
>sp|Q56K04|CRIP1_BOVIN Cysteine-rich protein 1
Length = 77
Score = 41.6 bits (96), Expect = 0.002
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSFNHGKPYCT-PHYVELFKKRG 128
+H+ C +C KC L++G + + GKPYC P Y +F +G
Sbjct: 24 WHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKG 65
>sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 261
Score = 40.8 bits (94), Expect = 0.003
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 104
+HK CF C CK L+ N+ KPYC HY
Sbjct: 25 WHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 263
Score = 40.8 bits (94), Expect = 0.003
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 6 FHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 104
+HK CF C CK L+ N+ KPYC HY
Sbjct: 25 WHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,609,974
Number of Sequences: 369166
Number of extensions: 1630223
Number of successful extensions: 4915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4910
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)