Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G22
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 35 0.14
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 35 0.14
sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR) 32 1.2
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 32 1.2
sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine am... 31 1.6
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3 30 2.7
sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory s... 30 3.5
sp|Q07872|ENT4_YEAST Epsin-4 30 3.5
sp|P53274|YG36_YEAST Hypothetical 25.8 kDa protein in ASN2-... 30 3.5
sp|P25623|SYP1_YEAST Suppressor of yeast profilin deletion 30 4.6
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 3 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 137
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 107 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 166
Query: 138 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 311
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 167 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 224
Query: 312 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 419
EV V + ++D N+E + D TNDD+
Sbjct: 225 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +3
Query: 3 KKNSGDESKTESTVMQLAQNFSNKLRVSVRAMST---VCYNHMSSGN------------K 137
KKN+ +E K +Q + L+ ++ ++ + Y + S K
Sbjct: 24 KKNNAEEMKNLVNFLQSHKKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCVKKMNMLK 83
Query: 138 ETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKV 311
E +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 84 ENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ- 141
Query: 312 EVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 419
EV V + ++D N+E + D TNDD+
Sbjct: 142 EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|Q8AYI2|PRGR_RANDY Progesterone receptor (PR) (dyPR)
Length = 711
Score = 31.6 bits (70), Expect = 1.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 88 SEPCQPCAIITCLRETRKRWILCSIKPSISTPPYQNQHI 204
++P P A++ L + +R +LC +K S S P ++N HI
Sbjct: 484 TKPETPSALLCSLNQLCERQLLCVVKWSKSLPGFRNMHI 522
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 33 ESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEI 212
+S ++A +F N L +S++ YN++S NK L K ++S + + +
Sbjct: 435 DSESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFLFSAIKSNATKHK 488
Query: 213 RDQ--ISIENIKWIGQNSIGLLSNIKESLSA 299
R Q S+EN +G NS + + K S++A
Sbjct: 489 RTQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
>sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine amidase
Length = 233
Score = 31.2 bits (69), Expect = 1.6
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 135 KETLDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 281
K LDL FN + + LS+ +Q+++ I ++ I + S+G+LS+I
Sbjct: 133 KTVLDLQFNNFQKMEINLSRYIFQQLKKIIKLDKIN-LNYASLGILSSI 180
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3
Length = 3497
Score = 30.4 bits (67), Expect = 2.7
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 207 EIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVSQNDEDSTHNEEAN 386
E + + I ++ +S+ + S KE +K K + + P + +VS NDEDS EE
Sbjct: 1787 EYVETVQIVDLSEDSDSSVRVDSQGKEMRRSKSKHSLNETP-LPKVSDNDEDSAEQEEDL 1845
Query: 387 LR 392
LR
Sbjct: 1846 LR 1847
>sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory subunit SDS22
Length = 338
Score = 30.0 bits (66), Expect = 3.5
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 117 HMSSG-NKET----LDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 281
H+SS NK T LDL FNK +HI + + + +EN+ ++ QNSI + N+
Sbjct: 104 HISSNVNKLTKLTSLDLSFNKIKHI---------KNLENLTDLENLYFV-QNSISKIENL 153
Query: 282 KESLSAKYKVEVGQN 326
S K +E+G N
Sbjct: 154 STLKSLK-NLELGGN 167
>sp|Q07872|ENT4_YEAST Epsin-4
Length = 247
Score = 30.0 bits (66), Expect = 3.5
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Frame = +3
Query: 51 LAQNFSNKLRVSVRAMSTVCYNH--MSSGNKETLDLMFNKTEHIYSTLSKSTYQEIRDQI 224
L QN N R ++ M T+ M++G+ E + + I L Q+ RD+
Sbjct: 62 LGQNRRNSHRNCIQVMKTLTLVSYLMNNGSNEFIKWLKGNMILI-EILEDFQVQDPRDER 120
Query: 225 SIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQ-NPSVEEVSQNDEDSTHNEEANLRDYL 401
E+I+ + +N +GLL + + L K + +V Q S+ + D++H + +R L
Sbjct: 121 KAEDIQKLSRNVLGLLQD--DGLLEKQRKDVIQFRSSISTPGRKSTDNSHLKLEEMRSEL 178
Query: 402 S 404
+
Sbjct: 179 T 179
>sp|P53274|YG36_YEAST Hypothetical 25.8 kDa protein in ASN2-PHB1 intergenic region
Length = 230
Score = 30.0 bits (66), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 166 PSISTPPYQNQHIKKFGIKYRLKTSSGLVKIR 261
P I+ P + H F +YRL+T +GLVK++
Sbjct: 120 PDITAPVTNSAHDAAFPEEYRLETETGLVKLK 151
>sp|P25623|SYP1_YEAST Suppressor of yeast profilin deletion
Length = 870
Score = 29.6 bits (65), Expect = 4.6
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 159 NKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVE 338
+ TE+ Y+TL + +E+++ + N W + S L S + ++ + S+E
Sbjct: 114 SSTEY-YNTLDQQVVRELKESVE-NNTSW--RESKDLHSKLSKNAA-----------SIE 158
Query: 339 EVSQNDEDSTHNEEA 383
S+N+E+S+H EEA
Sbjct: 159 HYSKNNENSSHLEEA 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,867,346
Number of Sequences: 369166
Number of extensions: 1044479
Number of successful extensions: 3244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3238
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)