Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G21
(523 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 41 0.002
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 40 0.003
sp|P23202|URE2_YEAST Protein URE2 39 0.010
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 38 0.013
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 38 0.017
sp|Q7LLZ8|URE2_SACPA Protein URE2 >gi|54036609|sp|Q96X44|UR... 35 0.083
sp|Q12224|RLM1_YEAST Transcription factor RLM1 35 0.14
sp|Q03101|CYAG_DICDI Adenylate cyclase, germination specifi... 34 0.19
sp|P38692|KIC1_YEAST Serine/threonine-protein kinase KIC1 (... 34 0.24
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 34 0.24
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Frame = +3
Query: 3 HLPISNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAF-----DTGVSKWTNNVD 167
HL +S KN+ H+ + K+SN++N+ N NI NN S D+ ++ NN
Sbjct: 1047 HLLLSYKNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINNNDS 1106
Query: 168 NQNF-----SNSSTRHNVSVGASGDNSGISQINTSENKPPNLYSGIYDVNKRIKAI 320
N N SN + HN S ++ S +N+ N N+ S I++ N + I
Sbjct: 1107 NMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNMNSIHNNDSNMNS-IHNNNSNMNNI 1161
Score = 33.1 bits (74), Expect = 0.41
Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Frame = +3
Query: 12 ISNKNRPSTAWHIMN---GIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFS 182
I KN+ +H +N + N N NN + NN DN N +
Sbjct: 1497 IKIKNKEKRKYHPKEEKENFDRNNYKMITDNNNNDNNNNNND--------NNNNDNNNNN 1548
Query: 183 NSSTRHNVSVGASGDNSGISQINTSENKPPNLYSGIY--DVNKRIKAIKQANCTNPQAL- 353
N+S +N D + + N + N PN +GIY + N C
Sbjct: 1549 NNSNNNNYYYNLHDDVNNLGVTNYNTNIYPNDCNGIYEKETNNNELTTNSNMCDKNNDFS 1608
Query: 354 --FYWGVTPNDIMY 389
F+ + ND++Y
Sbjct: 1609 DEFFNNINENDLLY 1622
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 40.4 bits (93), Expect = 0.003
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +3
Query: 12 ISNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSS 191
IS+ N + + N ++N +N N N +N S + ++ TNN +N N +N++
Sbjct: 446 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNN-NNSNSNNNN 504
Query: 192 TRHNVSVGASGDNSGISQINTSENKPPNLY 281
+N + ++ +N+ I+ N + N N+Y
Sbjct: 505 NNNNSNSNSNSNNNNINNNNNNNNNNNNIY 534
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +3
Query: 66 SSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGDNSGISQ 245
+ +IS+ N N NN + + + NN +N + S+++ +N++ + +NS +
Sbjct: 443 NEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNN 502
Query: 246 INTSENKPPNLYSGIYDVN 302
N + N N S ++N
Sbjct: 503 NNNNNNSNSNSNSNNNNIN 521
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +3
Query: 12 ISNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSS 191
I+ ST+ +N + + +N N N NN + + NN +N N SNSS
Sbjct: 427 ITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNSNSS 482
Query: 192 TRHNVSVGASGDNSGISQINTSENKPPN 275
+N ++ + +N+ + N + N N
Sbjct: 483 NTNNNNINNTTNNNNSNSNNNNNNNNSN 510
Score = 30.0 bits (66), Expect = 3.5
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNG-IKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSS 191
+N N + I NG I ++ ++ P+ +N + S + + NN +N N +N++
Sbjct: 411 NNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNN 470
Query: 192 TRHNVSVGASGDNSGISQINTSEN 263
+N + ++ N+ + IN + N
Sbjct: 471 NNNNNNNNSNSSNTNNNNINNTTN 494
Score = 29.6 bits (65), Expect = 4.6
Identities = 19/93 (20%), Positives = 42/93 (45%)
Frame = +3
Query: 48 IMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGD 227
I + ++N +N N N NN + + + ++N +N N +N++ +N + + +
Sbjct: 446 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNN 505
Query: 228 NSGISQINTSENKPPNLYSGIYDVNKRIKAIKQ 326
N+ + + S N N + + N I K+
Sbjct: 506 NNNSNSNSNSNNNNINNNNNNNNNNNNIYLTKK 538
Score = 29.3 bits (64), Expect = 6.0
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 23/114 (20%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNN-RSPAFDTGVSKWTNNVDNQN----- 176
+N N +T + +N ++N SN N N +N S + + ++ NN +N N
Sbjct: 477 NNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNNNNIYLT 536
Query: 177 -----------------FSNSSTRHNVSVGASGDNSGISQINTSENKPPNLYSG 287
+NSS +N S G+ G+NS I + PP+ +G
Sbjct: 537 KKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGNNSSI----IKQRSPPHSING 586
>sp|P23202|URE2_YEAST Protein URE2
Length = 354
Score = 38.5 bits (88), Expect = 0.010
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +3
Query: 24 NRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHN 203
N + ++ N ++ NI N N Q+N + F TGV+ +N N ++SS +N
Sbjct: 4 NNGNQVSNLSNALRQVNIGNRNSNTTTDQSNINFEFSTGVN------NNNNNNSSSNNNN 57
Query: 204 VSVGASGDNSGISQINTSENKPPN 275
V SG N SQ N +EN N
Sbjct: 58 VQNNNSGRNG--SQNNDNENNIKN 79
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 38.1 bits (87), Expect = 0.013
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +3
Query: 48 IMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGD 227
I+N ++N +N N NI NN + + + NN +N N +N++T +N + +
Sbjct: 266 ILNSNNNNNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNT 325
Query: 228 NSGISQINTSENKPPN 275
N+ + IN + N N
Sbjct: 326 NNNNNNINNNNNNTNN 341
Score = 35.8 bits (81), Expect = 0.064
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSST 194
+N N S +I N ++N SN N N NN + + + + NN +N +N++
Sbjct: 274 NNNNNNSNINNINNN--NNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNN 331
Query: 195 RHNVSVGASGDNSGISQINTSENKPPN 275
+N + + +N+ + NT+ N N
Sbjct: 332 INNNNNNTNNNNNNANNQNTNNNNMGN 358
Score = 33.5 bits (75), Expect = 0.32
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = +3
Query: 54 NGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGDNS 233
NGI +SN +N N NN S + + N+ +N N SN++ +N S + +N+
Sbjct: 264 NGILNSNNNN------NNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNN 317
Query: 234 GISQINTSENKPPNLYSGIYDVNKRIKAIKQANCTN 341
+ N + N N+ + + N N N
Sbjct: 318 NNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNN 353
Score = 33.5 bits (75), Expect = 0.32
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSST 194
+N N +T + N + N +N N N NN + +T + NN +N N N++
Sbjct: 314 TNNNNNNTNNNTNNNNNNINNNN---NNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNN 370
Query: 195 RHNVSVGASGDNSGISQINTSENKPPNLYSGIYDVNK-----RIKAIKQANCTNPQA 350
N + + +NS + T+ NL + + + R+ + ++ NP A
Sbjct: 371 HQNNNNNNTSNNSNTTTATTTAPGGNNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNA 427
Score = 32.7 bits (73), Expect = 0.54
Identities = 21/95 (22%), Positives = 40/95 (42%)
Frame = +3
Query: 54 NGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGDNS 233
N ++N SN N N NN + + + TNN +N +N++ +N + A+ N+
Sbjct: 292 NSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNT 351
Query: 234 GISQINTSENKPPNLYSGIYDVNKRIKAIKQANCT 338
+ + + N N + + N +N T
Sbjct: 352 NNNNMGNNSNNNNNPNNNNHQNNNNNNTSNNSNTT 386
Score = 31.6 bits (70), Expect = 1.2
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSST 194
+N N ST + N ++N +N N NI NN + + + N +N N N+S
Sbjct: 303 NNNNNNSTNNNTNNNNNNTN-NNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSN 361
Query: 195 RHNVSVGASGDNSGISQINTSEN 263
+N + N+ + NTS N
Sbjct: 362 NNNNPNNNNHQNN--NNNNTSNN 382
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 37.7 bits (86), Expect = 0.017
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 3 HLPISNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFS 182
H +N P+ ++ ++NI+N+ N+ NI NN + G +NN +N N +
Sbjct: 476 HFSGNNNIAPNYRYNNNINNNNNNINNMTNNRYNINNNIN-GNGNGNGNNSNNNNNHNNN 534
Query: 183 NSSTRHNVSVGASGDNSGISQINTSENKPPNLYSGI 290
+++ HN S+ S N+ + N + N N S I
Sbjct: 535 HNNNHHNGSIN-SNSNTNNNNNNNNGNNSNNCNSNI 569
Score = 32.3 bits (72), Expect = 0.70
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 54 NGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGDNS 233
NG + N SN N N NN + TNN +N N N+S N ++G G S
Sbjct: 517 NGNGNGNNSNNNNNHNNNHNNNHHNGSINSNSNTNNNNNNNNGNNSNNCNSNIGMGGCGS 576
Query: 234 GI 239
+
Sbjct: 577 NM 578
>sp|Q7LLZ8|URE2_SACPA Protein URE2
sp|Q96X44|URE2_SACDO Protein URE2
Length = 359
Score = 35.4 bits (80), Expect = 0.083
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +3
Query: 24 NRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHN 203
N + ++ N ++ NI N N Q+N + F GV+ +N N S+S+ +N
Sbjct: 4 NNGNQVSNLSNALRQVNIGNRNSNTTTDQSNINFEFSAGVNN-----NNNNSSSSNNNNN 58
Query: 204 VSVGASGDNSGISQINTSEN 263
+ A +NSG + +++N
Sbjct: 59 NNNNAQNNNSGRNGSQSNDN 78
>sp|Q12224|RLM1_YEAST Transcription factor RLM1
Length = 676
Score = 34.7 bits (78), Expect = 0.14
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 15 SNKNRPSTAWHIMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSST 194
+N N S+ + NG + N SN N N +P +S+ T + D+ N SNSST
Sbjct: 574 NNNNNNSSNNNSNNG--NDNNSNNSNNSYYSNNEDAPVNGAAISEHTTDGDSNNQSNSST 631
Query: 195 RHNVSVGASGDNSGISQINTSE 260
+ +G+ INT++
Sbjct: 632 YDAAATAYNGNTGLTPYINTAQ 653
Score = 31.6 bits (70), Expect = 1.2
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +3
Query: 18 NKNRPSTAWHIMNGIKSSNISNL-RPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSST 194
N N P T + + + N SN+ N N NN + + + N +N N SN+S
Sbjct: 541 NTNNPGTFPPVQTAVNNGNSSNISSTNNTNNNNNNNNNNSSNNNSNNGNDNNSNNSNNSY 600
Query: 195 RHNVSVGASGDNSGISQINTSENKPPNLYSGIYD 296
N + A + + IS+ T + S YD
Sbjct: 601 YSN-NEDAPVNGAAISEHTTDGDSNNQSNSSTYD 633
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +3
Query: 81 NLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGDNSGISQINTSE 260
++ PN N +P V NN ++ N S+++ +N + + ++S + N ++
Sbjct: 531 SMGPNSAKPGNTNNPGTFPPVQTAVNNGNSSNISSTNNTNNNNNNNNNNSSNNNSNNGND 590
Query: 261 NKPPNLYSGIYDVNK 305
N N + Y N+
Sbjct: 591 NNSNNSNNSYYSNNE 605
>sp|Q03101|CYAG_DICDI Adenylate cyclase, germination specific (ATP pyrophosphate-lyase)
(Adenylyl cyclase)
Length = 858
Score = 34.3 bits (77), Expect = 0.19
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +3
Query: 48 IMNGIKSSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASGD 227
I+N ++NI++ N N NN + N +N NFS+ ++ GD
Sbjct: 736 ILNNNNNNNINDNNINNTNFNNNNNDININNSDNVNNYENNNNFSDKIENND------GD 789
Query: 228 NSGISQIN---TSEN--KPPNLYSGIYDVNKRIKAIKQANCTN 341
N+ I+ N T+EN K L+ + IK K+ NC N
Sbjct: 790 NNNINDNNYKSTNENNIKSKTLFKDSKSLINDIKMAKE-NCDN 831
>sp|P38692|KIC1_YEAST Serine/threonine-protein kinase KIC1 (Kinase that interacts with
CDC31) (N-rich kinase 1)
Length = 1080
Score = 33.9 bits (76), Expect = 0.24
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = +3
Query: 12 ISNKNRPSTAWHIMNGIKSS---NISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFS 182
ISN+ S + H +N + SS N+S + N V NN P +S T N + +
Sbjct: 904 ISNRKNSSASEHPLNILGSSVSGNVSGIGNNNVGSNNNSGPNNSVPLSANTGNTTIK--A 961
Query: 183 NSSTRHNVSVGASGDNSGISQINTSENKPPN-LYSGIYDVNKRIKAIKQANCTNPQAL 353
NS+T S A+ + ISQ N + S + ++ C PQ+L
Sbjct: 962 NSTTIATSSSAAASTTAPISQQTIPSGTQFNHILSSAATAANSVNSLGFGMCPPPQSL 1019
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 33.9 bits (76), Expect = 0.24
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Frame = +3
Query: 66 SSNISNLRPNKVNIQNNRSPAFDTGVSKWTNNVDNQNFSNSSTRHNVSVGASG------- 224
++ +N N N NN +PA +T + T + N N N++ +N + GASG
Sbjct: 19 TTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTN--NNTNNNNTNTGASGVDDFQNF 76
Query: 225 -DNSGISQINTSENKPPNLYSGIYDVNKRIKAIKQANCTNPQAL 353
D Q S N N S D N N T+P A+
Sbjct: 77 FDPKPFDQNLDSNNNNSN--SNNNDNNNSNTVASSTNFTSPTAV 118
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,969,397
Number of Sequences: 369166
Number of extensions: 1186673
Number of successful extensions: 3476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3129
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)