Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G16-2
(757 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface anti... 32 1.4
sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 prote... 32 1.4
sp|P13831|RESA_PLAFN Ring-infected erythrocyte surface antigen 31 3.1
sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface antigen 31 3.1
>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen precursor
Length = 1073
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 69 LESQYEDLVKQQLDRSDDKEMTLKKMADQLRKAESIVTAQYNGKTNNKTNK 221
+E+ + +Q L + E TLKK A L+K SI+ GK N+K +K
Sbjct: 805 IENTALNAAEQLLSDNSVDEKTLKKRAQSLKKLSSIMERYAGGKRNDKKSK 855
>sp|P29152|POLG_PSBMV Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3206
Score = 32.3 bits (72), Expect = 1.4
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Frame = +3
Query: 9 EEELGHLYSAYL---------TSFRNQAYLESQYEDLVKQQL---DRSDDKEMTLKKMAD 152
E L HLY+ + T NQ Y + + +K +L D + D E K+ D
Sbjct: 2873 ETALRHLYTNAMATQSELEKYTEAINQHYNDEGGDGSIKVRLQAGDETKDDERRRKEEED 2932
Query: 153 QLRKAESIVTAQYNGKTNNKTNK 221
+ ++ ESI +Q+ +NK NK
Sbjct: 2933 RKKREESIDASQFGSNRDNKKNK 2955
>sp|P13831|RESA_PLAFN Ring-infected erythrocyte surface antigen
Length = 760
Score = 31.2 bits (69), Expect = 3.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 69 LESQYEDLVKQQLDRSDDKEMTLKKMADQLRKAESIVTAQYNGKTNNKTNK 221
+E+ + +Q L + E TLKK A L+K SI+ GK N+K K
Sbjct: 591 IENTALNAAEQLLSDNSVDEKTLKKRAQSLKKLSSIMERYAGGKRNDKKAK 641
>sp|Q26005|RESA_PLAFP Ring-infected erythrocyte surface antigen
Length = 304
Score = 31.2 bits (69), Expect = 3.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 69 LESQYEDLVKQQLDRSDDKEMTLKKMADQLRKAESIVTAQYNGKTNNKTNK 221
+E+ + +Q L + E TLKK A L+K SI+ GK N+K K
Sbjct: 50 IENTALNAAEQLLSDNSVDEKTLKKRAQSLKKLSSIMERYAGGKRNDKKAK 100
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,220,795
Number of Sequences: 369166
Number of extensions: 1176726
Number of successful extensions: 4321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4251
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)