Planarian EST Database


Dr_sW_012_G12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_012_G12
         (606 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43920|NIPM_HUMAN  NADH-ubiquinone oxidoreductase 15 kDa ...    40   0.004
sp|Q02379|NIPM_BOVIN  NADH-ubiquinone oxidoreductase 15 kDa ...    40   0.005
sp|Q99LY9|NIPM_MOUSE  NADH-ubiquinone oxidoreductase 15 kDa ...    34   0.25 
sp|Q923Y0|TAA8C_RAT  Trace amine-associated receptor 8c (Tra...    30   6.2  
sp|Q5QD06|TAA8B_MOUSE  Trace amine-associated receptor 8b          30   6.2  
sp|Q6ME80|KSGA_PARUW  Dimethyladenosine transferase (S-adeno...    30   6.2  
sp|P33396|AG2R_MELGA  Type-1 angiotensin II receptor (AT1)         29   8.1  
sp|P79785|AG2R_CHICK  Type-1 angiotensin II receptor (AT1)         29   8.1  
sp|Q923X9|TAA8A_RAT  Trace amine-associated receptor 8a (Tra...    29   8.1  
>sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
           (CI-15 kDa)
          Length = 106

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = +3

Query: 234 VQGHFAMNLRSTGASYHTMQSSRWPI----HCQIMERDYYRCLARVGFQNEQKYCRIYRE 401
           +Q  F +N+      + T+QS   P      C   E+++  C   +G+   +K C+I  +
Sbjct: 6   IQKRFGLNIDR----WLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYD 61

Query: 402 DVYECSFQEKAKRRRMYMTRMAMEKKAKSIEEPPKH 509
           D  EC  ++K  RR   + +   +   +    PP H
Sbjct: 62  DFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPH 97
>sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
           (CI-15 kDa)
          Length = 106

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +3

Query: 228 FVVQGHFAMNLRSTGASYHTMQSSRWPIHCQIMERDYYRCLARVGFQNEQKYCRIYREDV 407
           F VQ    ++L          Q  + P  C   E+++  C   +G    +K C+I  ED 
Sbjct: 4   FDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDF 63

Query: 408 YECSFQEKAKRRRMYMTRMAMEKKAKSIE-EPPKH 509
            EC  ++K   +R++  R   EK  K  +  PP H
Sbjct: 64  RECLLRQKT-MKRLHAIRRQREKLIKEGKYTPPPH 97
>sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa)
           (CI-15 kDa)
          Length = 106

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 315 CQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSIE 494
           C   E+++  C   +G    +K C+I  +D  EC  + K   RRM+  +   EK  K  +
Sbjct: 33  CHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKT-MRRMHDIKKQREKLMKEGK 91

Query: 495 -EPPKH 509
             PP H
Sbjct: 92  YTPPPH 97
>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Trace amine receptor 10)
           (TaR-10)
          Length = 344

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316
           CC  +FCY S+ + C +S D    + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b
          Length = 344

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316
           CC  +FCY S+ + C +S D    + D L
Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
          Length = 284

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 312 HCQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSI 491
           H   +E+D+        FQ   K   I+ ED+   S +E+ +      +R+  ++KAK I
Sbjct: 70  HVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQ------SRLRDDQKAKVI 123

Query: 492 EEPPKHL 512
              P HL
Sbjct: 124 ANLPYHL 130
>sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1)
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -1

Query: 537 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 358
           N  IF  I  ++     SW    +P +  TF DVL+ L   T   + D  D        +
Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290

Query: 357 LSLNTCNNPF 328
              N C NPF
Sbjct: 291 AYFNNCLNPF 300
>sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1)
          Length = 359

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = -1

Query: 537 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 358
           N  IF  I  ++     SW    +P +  TF DVL+ L   T   + D  D        +
Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290

Query: 357 LSLNTCNNPF 328
              N C NPF
Sbjct: 291 AYFNNCLNPF 300
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11)
           (TaR-11)
          Length = 344

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316
           CC  +FCY S  + C +S D    + D L
Sbjct: 109 CCDAAFCYSSLFHLCFISVDRYIAVTDPL 137
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,704,313
Number of Sequences: 369166
Number of extensions: 1381264
Number of successful extensions: 3774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3773
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)