Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_012_G12 (606 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa ... 40 0.004 sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa ... 40 0.005 sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa ... 34 0.25 sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Tra... 30 6.2 sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b 30 6.2 sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adeno... 30 6.2 sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1) 29 8.1 sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1) 29 8.1 sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Tra... 29 8.1
>sp|O43920|NIPM_HUMAN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa) (CI-15 kDa) Length = 106 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Frame = +3 Query: 234 VQGHFAMNLRSTGASYHTMQSSRWPI----HCQIMERDYYRCLARVGFQNEQKYCRIYRE 401 +Q F +N+ + T+QS P C E+++ C +G+ +K C+I + Sbjct: 6 IQKRFGLNIDR----WLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYD 61 Query: 402 DVYECSFQEKAKRRRMYMTRMAMEKKAKSIEEPPKH 509 D EC ++K RR + + + + PP H Sbjct: 62 DFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPH 97
>sp|Q02379|NIPM_BOVIN NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa) (CI-15 kDa) Length = 106 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = +3 Query: 228 FVVQGHFAMNLRSTGASYHTMQSSRWPIHCQIMERDYYRCLARVGFQNEQKYCRIYREDV 407 F VQ ++L Q + P C E+++ C +G +K C+I ED Sbjct: 4 FDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDF 63 Query: 408 YECSFQEKAKRRRMYMTRMAMEKKAKSIE-EPPKH 509 EC ++K +R++ R EK K + PP H Sbjct: 64 RECLLRQKT-MKRLHAIRRQREKLIKEGKYTPPPH 97
>sp|Q99LY9|NIPM_MOUSE NADH-ubiquinone oxidoreductase 15 kDa subunit (Complex I-15 kDa) (CI-15 kDa) Length = 106 Score = 34.3 bits (77), Expect = 0.25 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +3 Query: 315 CQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSIE 494 C E+++ C +G +K C+I +D EC + K RRM+ + EK K + Sbjct: 33 CHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKT-MRRMHDIKKQREKLMKEGK 91 Query: 495 -EPPKH 509 PP H Sbjct: 92 YTPPPH 97
>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c (Trace amine receptor 10) (TaR-10) Length = 344 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316 CC +FCY S+ + C +S D + D L Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b Length = 344 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316 CC +FCY S+ + C +S D + D L Sbjct: 109 CCDVAFCYSSALHLCFISVDRYIAVTDPL 137
>sp|Q6ME80|KSGA_PARUW Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 284 Score = 29.6 bits (65), Expect = 6.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 312 HCQIMERDYYRCLARVGFQNEQKYCRIYREDVYECSFQEKAKRRRMYMTRMAMEKKAKSI 491 H +E+D+ FQ K I+ ED+ S +E+ + +R+ ++KAK I Sbjct: 70 HVVAVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQ------SRLRDDQKAKVI 123 Query: 492 EEPPKHL 512 P HL Sbjct: 124 ANLPYHL 130
>sp|P33396|AG2R_MELGA Type-1 angiotensin II receptor (AT1) Length = 359 Score = 29.3 bits (64), Expect = 8.1 Identities = 21/70 (30%), Positives = 28/70 (40%) Frame = -1 Query: 537 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 358 N IF I ++ SW +P + TF DVL+ L T + D D + Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290 Query: 357 LSLNTCNNPF 328 N C NPF Sbjct: 291 AYFNNCLNPF 300
>sp|P79785|AG2R_CHICK Type-1 angiotensin II receptor (AT1) Length = 359 Score = 29.3 bits (64), Expect = 8.1 Identities = 21/70 (30%), Positives = 28/70 (40%) Frame = -1 Query: 537 NISIFHSIKDVLEALLCSWPFSPLPSESCTFCDVLLFLEKNTHKHLHDKFDNIFVHFEIL 358 N IF I ++ SW +P + TF DVL+ L T + D D + Sbjct: 235 NDDIFKMIVAIVFFFFFSW----IPHQVFTFLDVLIQLHVITDCKITDIVDTAMPFTICI 290 Query: 357 LSLNTCNNPF 328 N C NPF Sbjct: 291 AYFNNCLNPF 300
>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a (Trace amine receptor 11) (TaR-11) Length = 344 Score = 29.3 bits (64), Expect = 8.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 230 CCSRSFCYESSEYGCIVSYDAKFPMADSL 316 CC +FCY S + C +S D + D L Sbjct: 109 CCDAAFCYSSLFHLCFISVDRYIAVTDPL 137
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,704,313 Number of Sequences: 369166 Number of extensions: 1381264 Number of successful extensions: 3774 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3773 length of database: 68,354,980 effective HSP length: 105 effective length of database: 48,957,805 effective search space used: 4699949280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)