Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G04
(443 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceo... 217 8e-57
sp|Q02554|CUS1_YEAST Protein CUS1 95 6e-20
sp|Q5R789|ZCHC8_PONPY Zinc finger CCHC domain containing pr... 41 0.001
sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain containing pr... 41 0.001
sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain containing pr... 41 0.001
sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain containing pr... 38 0.011
sp|P30415|NKTR_MOUSE NK-tumor recognition protein (Natural-... 33 0.28
sp|Q9FFK1|SY31_ARATH Syntaxin 31 (AtSYP31) (AtSED5) 32 0.62
sp|P30414|NKTR_HUMAN NK-tumor recognition protein (Natural-... 31 1.1
sp|Q05859|FMN1B_MOUSE Formin-1 isoform IV (Limb deformity p... 30 1.8
>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Spliceosome associated protein 145)
(SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145
kDa subunit)
Length = 872
Score = 217 bits (553), Expect = 8e-57
Identities = 96/147 (65%), Positives = 121/147 (82%)
Frame = +3
Query: 3 FKLPDFIAKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTK 182
F+LPDFI +TGI EMR+ +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF QTK
Sbjct: 499 FELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTK 558
Query: 183 PELTKFGDIYYQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGP 362
P+LT GD+YY+GKE E + KE +PG LSDELR++LGM GPN+ K PPPWLIA QRYGP
Sbjct: 559 PKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGP 618
Query: 363 PPSYPNLKIPGLNKGIPPGCSFGFHAG 443
PPSYPNLKIPGLN IP CSFG+HAG
Sbjct: 619 PPSYPNLKIPGLNSPIPESCSFGYHAG 645
>sp|Q02554|CUS1_YEAST Protein CUS1
Length = 436
Score = 95.1 bits (235), Expect = 6e-20
Identities = 56/146 (38%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Frame = +3
Query: 3 FKLPDFIAKTGIMEMRQTAD----DKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFV 170
F+LPD I KT I +MR T D + EKSLK + +++PK+G +D+ Y+KL++ FF
Sbjct: 194 FELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFK 253
Query: 171 --EQTKPE-LTKFGDIYYQGKELEAKRK------ENRPGLLSDELRVALGMTTGPNSDKS 323
KP+ L FGD+YY+ + L + RPG +S ELR + + G
Sbjct: 254 IGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEG-----Q 308
Query: 324 PPPWLIAQQRYGPPPSYPNLKIPGLN 401
PPW + + G P YP+LKI GLN
Sbjct: 309 LPPWCMKMKDIGLPTGYPDLKIAGLN 334
>sp|Q5R789|ZCHC8_PONPY Zinc finger CCHC domain containing protein 8
Length = 704
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 213 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 374
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 272 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 320
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain containing protein 8
Length = 709
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 213 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 374
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 277 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 325
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain containing protein 8
Length = 707
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 213 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 374
Y +E+E + +PG++S+EL+ ALG+T DKS PP++ ++ G PP +
Sbjct: 274 YHAEEVEERFGRFKPGVISEELQDALGVT-----DKSLPPFIYRMRQLGYPPGW 322
>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain containing protein 8
Length = 613
Score = 37.7 bits (86), Expect = 0.011
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 213 YQGKELEAKRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSY 374
Y +E+E + + +PG++S EL+ ALG+T KS PP++ ++ G PP +
Sbjct: 173 YHAEEVEERFGKFKPGVISGELQDALGVTA-----KSLPPFIYRMRQLGYPPGW 221
>sp|P30415|NKTR_MOUSE NK-tumor recognition protein (Natural-killer cells
cyclophilin-related protein) (NK-TR protein)
Length = 1453
Score = 33.1 bits (74), Expect = 0.28
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +3
Query: 24 AKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFG 203
+ T + +T+ KE + + + DK +P G+ ++S + ++ L+
Sbjct: 1189 SSTSVTSPVETSGKKEGAEKSQMNLTDKWKPLQGVGNLSVSTATTSSALDVKA--LSTVP 1246
Query: 204 DIYYQGKELEAKRKEN-RPGLLSDELRVALGMTTGPNSDKS 323
++ QG +E K K RPG L DE+R + P + +S
Sbjct: 1247 EVKPQGLRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQES 1287
>sp|Q9FFK1|SY31_ARATH Syntaxin 31 (AtSYP31) (AtSED5)
Length = 336
Score = 32.0 bits (71), Expect = 0.62
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +3
Query: 237 KRKENRPGLLSDELRVALGMTTGPNSDKSPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPP 416
K ENR L S + V S PPPW + +G + +P LN G PP
Sbjct: 157 KAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFG---NLQQPLLPPLNTGAPP 213
Query: 417 G 419
G
Sbjct: 214 G 214
>sp|P30414|NKTR_HUMAN NK-tumor recognition protein (Natural-killer cells
cyclophilin-related protein) (NK-TR protein)
Length = 1462
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 54 TADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELE 233
T + +EKS N + K +P G+ +++ + VE LT ++ QG +E
Sbjct: 1208 TGKKEVAEKSQINLIDKKWKPLQGVGNLAAPNAATSSAVEVKV--LTTVPEMKPQGLRIE 1265
Query: 234 AKRKEN-RPGLLSDELRVALGMTTGPNSDKS 323
K K RPG L DE+R + P + +S
Sbjct: 1266 IKSKNKVRPGSLFDEVRKTARLNRRPRNQES 1296
>sp|Q05859|FMN1B_MOUSE Formin-1 isoform IV (Limb deformity protein)
Length = 1206
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 303 GPNSDKSPPPWL---IAQQRYG--PPPSYPNLKIPGLNKGIPPGCSFG 431
GP PPP L +A G PPP P PGL PPG SFG
Sbjct: 702 GPPPPPPPPPPLPNVLALPNSGGPPPPPPPPPPPPGLAPPPPPGLSFG 749
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,718,211
Number of Sequences: 369166
Number of extensions: 1084421
Number of successful extensions: 3572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3543
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)