Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G02-1
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5ZMW3|API5_CHICK Apoptosis inhibitor 5 (API-5) 36 0.031
sp|O35841|API5_MOUSE Apoptosis inhibitor 5 (API-5) (AAC-11) 34 0.090
sp|Q5R644|API5_PONPY Apoptosis inhibitor 5 (API-5) 34 0.12
sp|Q9BZZ5|API5_HUMAN Apoptosis inhibitor 5 (API-5) (Fibrobl... 34 0.12
sp|P66868|SUCC_BRUSU Succinyl-CoA synthetase beta chain (SC... 28 5.0
sp|P08965|MEI2_SCHPO Meiosis protein mei2 28 8.5
sp|P15687|VN53_ROTS1 Nonstructural RNA-binding protein 53 (... 28 8.5
>sp|Q5ZMW3|API5_CHICK Apoptosis inhibitor 5 (API-5)
Length = 523
Score = 35.8 bits (81), Expect = 0.031
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 1 TANLQILIRELFKAVPTFKTPIAPSWSVPVETAVSATKRLSTNNDNPSSQK 153
T N+ +LI++LF P++K+ + SW PV+ A + KR S + + S K
Sbjct: 418 TNNINVLIKDLFHIPPSYKSTVTLSWK-PVQKADANQKRTSEDTTSSSPPK 467
>sp|O35841|API5_MOUSE Apoptosis inhibitor 5 (API-5) (AAC-11)
Length = 504
Score = 34.3 bits (77), Expect = 0.090
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 1 TANLQILIRELFKAVPTFKTPIAPSWSVPVETAVSATKRLSTNNDNPSSQK 153
T N+ +LI++LF P++K+ + SW PV+ KR S + + S K
Sbjct: 418 TNNINVLIKDLFHIPPSYKSTVTLSWK-PVQKVEIGQKRTSEDTSSGSPPK 467
>sp|Q5R644|API5_PONPY Apoptosis inhibitor 5 (API-5)
Length = 504
Score = 33.9 bits (76), Expect = 0.12
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 1 TANLQILIRELFKAVPTFKTPIAPSWSVPVETAVSATKRLSTNNDNPSSQK 153
T N+ +LI++LF P++K+ + SW PV+ KR S + + S K
Sbjct: 418 TNNINVLIKDLFHIPPSYKSTVTLSWK-PVQKVEIGQKRASEDTTSGSPPK 467
>sp|Q9BZZ5|API5_HUMAN Apoptosis inhibitor 5 (API-5) (Fibroblast growth factor
2-interacting factor) (FIF) (XAGL protein) (AAC-11)
Length = 510
Score = 33.9 bits (76), Expect = 0.12
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 1 TANLQILIRELFKAVPTFKTPIAPSWSVPVETAVSATKRLSTNNDNPSSQK 153
T N+ +LI++LF P++K+ + SW PV+ KR S + + S K
Sbjct: 418 TNNINVLIKDLFHIPPSYKSTVTLSWK-PVQKVEIGQKRASEDTTSGSPPK 467
>sp|P66868|SUCC_BRUSU Succinyl-CoA synthetase beta chain (SCS-beta)
sp|P66867|SUCC_BRUME Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 398
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 185 GLKLFPRLGRNFCEEGLSLLVDSRLVALT 99
GLKLFP L + F E+ +SLL + L+ +T
Sbjct: 187 GLKLFPILYKAFTEKDMSLLEINPLIVMT 215
>sp|P08965|MEI2_SCHPO Meiosis protein mei2
Length = 750
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 34 FKAVPTFKTPIAPSWSVPVETAVSATKRLSTNNDNPSSQ 150
F +VP +T +P+W VS+T ++ ++ NPS Q
Sbjct: 428 FGSVPLGRTESSPAWGTSGYYDVSSTSPVAPSDRNPSRQ 466
>sp|P15687|VN53_ROTS1 Nonstructural RNA-binding protein 53 (NS53) (NCVP2)
Length = 495
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 105 THCCFDGDTPRRCNWCFKGWNCFEQLPNQYLKIRS 1
THC + P C WC + CF LK+R+
Sbjct: 52 THC-YGCSLPHVCKWCVQNRRCFLDNEPHLLKLRT 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,668,281
Number of Sequences: 369166
Number of extensions: 470933
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)