Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_F21
(608 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8SPI2|CHCH7_MACFA Coiled-coil-helix-coiled-coil-helix d... 32 1.7
sp|Q8K2Q5|CHCH7_MOUSE Coiled-coil-helix-coiled-coil-helix d... 30 3.7
sp|Q9BUK0|CHCH7_HUMAN Coiled-coil-helix-coiled-coil-helix d... 30 3.7
sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1... 30 6.3
sp|Q27520|C13A1_CAEEL Putative cytochrome P450 CYP13A1 29 8.2
sp|O32086|YUBA_BACSU Hypothetical UPF0118 protein yubA 29 8.2
>sp|Q8SPI2|CHCH7_MACFA Coiled-coil-helix-coiled-coil-helix domain containing protein 7
Length = 85
Score = 31.6 bits (70), Expect = 1.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 195 EKNSSLKCLEDNMGNKKMCQNEINNCKQCKTFW 293
E ++S +CL++N +K+ C K C+ FW
Sbjct: 19 ESDASTRCLDENNYDKERCSTYFLKYKNCRKFW 51
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 433 DVDPCDNEVKLFNECLDNNNKMGIFCRETSKKVTSCYGFWEN 558
D++PC +E CLD NN C K +C FW +
Sbjct: 12 DINPCLSESDASTRCLDENNYDKERCSTYFLKYKNCRKFWHS 53
>sp|Q8K2Q5|CHCH7_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 7
Length = 85
Score = 30.4 bits (67), Expect = 3.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 433 DVDPCDNEVKLFNECLDNNNKMGIFCRETSKKVTSCYGFWEN 558
D++PC +E C+D NN C K +C FW +
Sbjct: 12 DINPCLSESDASTRCMDENNYDRERCSSYFLKYKNCRRFWNS 53
Score = 30.0 bits (66), Expect = 4.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 195 EKNSSLKCLEDNMGNKKMCQNEINNCKQCKTFW 293
E ++S +C+++N +++ C + K C+ FW
Sbjct: 19 ESDASTRCMDENNYDRERCSSYFLKYKNCRRFW 51
>sp|Q9BUK0|CHCH7_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 7
Length = 85
Score = 30.4 bits (67), Expect = 3.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 195 EKNSSLKCLEDNMGNKKMCQNEINNCKQCKTFW 293
E ++S +CL++N +++ C K C+ FW
Sbjct: 19 ESDASTRCLDENNYDRERCSTYFLRYKNCRRFW 51
Score = 29.6 bits (65), Expect = 6.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 433 DVDPCDNEVKLFNECLDNNNKMGIFCRETSKKVTSCYGFWEN 558
D++PC +E CLD NN C + +C FW +
Sbjct: 12 DINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNS 53
>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 precursor
Length = 601
Score = 29.6 bits (65), Expect = 6.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 385 PKEQRDNIIESINAGWDVDPCDNEVKLFNECLDNNNKMGIFCRET 519
P++QR N ++ DPC N+ NEC N M +CR++
Sbjct: 467 PQQQRPATTPQSNC-YNEDPCCNQWSRQNECRTNTVYMNRYCRKS 510
>sp|Q27520|C13A1_CAEEL Putative cytochrome P450 CYP13A1
Length = 519
Score = 29.3 bits (64), Expect = 8.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 463 LFNECLDNNNKMGIFCRETSKKVTSCYGFWE 555
+F LDNN + CRE +KK YGF E
Sbjct: 43 VFLNSLDNNFPFPLQCREWTKKFGKIYGFTE 73
>sp|O32086|YUBA_BACSU Hypothetical UPF0118 protein yubA
Length = 388
Score = 29.3 bits (64), Expect = 8.2
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 392 NKEIIL*NQLMLVGM*ILVIMKLNFLMSALIIIIKWV 502
NK ++ L+L+G+ ILV K +F+ + +I+++K +
Sbjct: 18 NKFVLFLLVLLLIGLNILVFTKTSFIFTPIIVLLKTI 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,595,795
Number of Sequences: 369166
Number of extensions: 1008035
Number of successful extensions: 2068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)