Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_F10
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96P88|GNRR2_HUMAN Gonadotropin-releasing hormone II rec... 29 3.8
sp|Q9YW29|ETF2_MSEPV Early transcription factor 82 kDa subu... 28 8.5
>sp|Q96P88|GNRR2_HUMAN Gonadotropin-releasing hormone II receptor (Type II GnRH receptor)
(GnRH-II-R)
Length = 379
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 90 STRQREPSQIRQQQVGRCFIHRSECD 13
S +REPSQ+R V R FIH + D
Sbjct: 61 SVTRREPSQLRPSPVRRLFIHLAAAD 86
>sp|Q9YW29|ETF2_MSEPV Early transcription factor 82 kDa subunit (VETF large subunit)
Length = 760
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +1
Query: 193 YLVDFDWSKLICLSNI----SCVCVSIYNAFYL 279
Y ++ D+ L+ +SNI +C+S YN FY+
Sbjct: 189 YSINIDFQDLLRISNIPDYNKTLCISAYNNFYI 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,429,970
Number of Sequences: 369166
Number of extensions: 618275
Number of successful extensions: 1155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)