Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_F08
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 176 2e-44
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 176 3e-44
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 176 3e-44
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 167 9e-42
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 155 4e-38
sp|P36411|RAB7_DICDI Ras-related protein Rab7 147 2e-35
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 141 7e-34
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 141 9e-34
sp|P31022|RAB7_PEA Ras-related protein Rab7 137 1e-32
sp|P93267|RAB7_MESCR Ras-related protein Rab7A 137 1e-32
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 176 bits (447), Expect = 2e-44
Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQ 182
ADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 183 QWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINL-ANNNPQN 359
WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N+ +
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKT 200
Query: 360 QSSSCTC 380
+ SC+C
Sbjct: 201 SAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 176 bits (446), Expect = 3e-44
Identities = 83/127 (65%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQ 182
ADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 183 QWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQ 362
WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N+
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKA 200
Query: 363 SS-SCTC 380
S+ SC+C
Sbjct: 201 SAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 176 bits (445), Expect = 3e-44
Identities = 83/127 (65%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQ 182
ADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 183 QWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQNQ 362
WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ I L N
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKA 200
Query: 363 SS-SCTC 380
S+ SC+C
Sbjct: 201 SAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 167 bits (424), Expect = 9e-42
Identities = 79/127 (62%), Positives = 98/127 (77%), Gaps = 1/127 (0%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGERNVTTRRAQ 182
ADCCVLV+DVT P TF TLDSWR EFLIQ+SPRDP++FPFVV+GNK+DL R V T+RAQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 183 QWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINL-ANNNPQN 359
W SK +I YFE SAKEA+NVEQAFQ +AR AL QE E ++ +EFP+ + L N+ +
Sbjct: 141 AWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKT 200
Query: 360 QSSSCTC 380
+ SC+C
Sbjct: 201 SAESCSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 155 bits (393), Expect = 4e-38
Identities = 76/128 (59%), Positives = 95/128 (74%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGE--RNVTTRR 176
ADCCVLVYDV K+F LDSWRDEFLIQ+SPRDPD+FPFVV+GNK+D+ E R ++T+R
Sbjct: 81 ADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKR 140
Query: 177 AQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQ 356
A +CQSKG+I YFE SAKEA+NVEQAF+ +AR AL QE + +F D IN+ + +
Sbjct: 141 AMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINI---HIE 197
Query: 357 NQSSSCTC 380
N C C
Sbjct: 198 NDRDGCAC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 147 bits (370), Expect = 2e-35
Identities = 74/125 (59%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL-GERNVTTRRA 179
ADCCVL YDV + KTF LDSWRDEFLIQ+ PRDPD+FPFVV+GNK+DL +R V+ +RA
Sbjct: 81 ADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRA 140
Query: 180 QQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQN 359
WCQSKG+I YFE SAKEA+NVEQAFQ +AR A+ E+ ++ P I + PQ
Sbjct: 141 ASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED--GLVFPIPTNIQVI-PEPQP 197
Query: 360 QSSSC 374
S C
Sbjct: 198 AKSGC 202
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 141 bits (356), Expect = 7e-34
Identities = 69/128 (53%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDLGE--RNVTTRR 176
ADCCVLVYDV K+F TLDSWRDEFLIQ+SP +P+ FPF+++GNKVD+ E R V+ +
Sbjct: 81 ADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSK 140
Query: 177 AQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNPQ 356
A +CQ++G+I YFE SAKEA+NV++AF+ VA+ AL + DI ++F D I+L + +
Sbjct: 141 ALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHL---DME 197
Query: 357 NQSSSCTC 380
+Q +SC C
Sbjct: 198 SQKTSCYC 205
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 141 bits (355), Expect = 9e-34
Identities = 68/129 (52%), Positives = 92/129 (71%), Gaps = 3/129 (2%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTR 173
ADCCVLVYDV + K+F L++WR+EFLIQ++P DP++FPFVV+GNK+D+ R V+ +
Sbjct: 81 ADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEK 140
Query: 174 RAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNP 353
+A+ WC SKG+I YFE SAKE NV+ AFQ +A+ AL E E +I PD I++A
Sbjct: 141 KAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIY--LPDTIDVAGGGR 198
Query: 354 QNQSSSCTC 380
Q +SS C C
Sbjct: 199 QQRSSGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 137 bits (346), Expect = 1e-32
Identities = 66/129 (51%), Positives = 94/129 (72%), Gaps = 3/129 (2%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTR 173
ADCCVLVYDV K+F L++WR+EFLIQ++P DP++FPFVVIGNK+D+ R V+ +
Sbjct: 81 ADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEK 140
Query: 174 RAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNP 353
+A+ WC +KG+I YFE SAKE +NVE+AFQ +A+ AL E ++ PD I++ N++
Sbjct: 141 KARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELY--LPDTIDVGNSS- 197
Query: 354 QNQSSSCTC 380
Q +S+ C C
Sbjct: 198 QPRSTGCEC 206
>sp|P93267|RAB7_MESCR Ras-related protein Rab7A
Length = 207
Score = 137 bits (345), Expect = 1e-32
Identities = 65/129 (50%), Positives = 93/129 (72%), Gaps = 3/129 (2%)
Frame = +3
Query: 3 ADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPFVVIGNKVDL---GERNVTTR 173
ADCCVL YDV + K+F +L+ WR+EFLIQ+SP DPD+FPFV++GNK+D+ R V+ +
Sbjct: 81 ADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEK 140
Query: 174 RAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENETDIISEFPDKINLANNNP 353
+A+ WC SKG+I YFE SAK+ NVE+AFQ +A+ A+ +NE + + PD I++A +
Sbjct: 141 KAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAI--QNEPEEETYLPDTIDMAGSTR 198
Query: 354 QNQSSSCTC 380
SS+C C
Sbjct: 199 PQSSSACEC 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,766,755
Number of Sequences: 369166
Number of extensions: 896566
Number of successful extensions: 2659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)