Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_F04
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91800|TCTP_SCHJA Translationally-controlled tumor prote... 139 3e-33
sp|Q10344|TCTP_SCHPO Translationally-controlled tumor prote... 134 1e-31
sp|Q98SJ7|TCTP_LABRO Translationally-controlled tumor prote... 132 3e-31
sp|Q9DGK4|TCTP_BRARE Translationally-controlled tumor prote... 130 2e-30
sp|P13693|TCTP_HUMAN Translationally-controlled tumor prote... 124 8e-29
sp|Q5E984|TCTP_BOVIN Translationally-controlled tumor prote... 124 8e-29
sp|P43348|TCTP_RABIT Translationally-controlled tumor prote... 124 8e-29
sp|Q7ZYF2|TCTP_XENLA Translationally-controlled tumor prote... 122 3e-28
sp|P43347|TCTP_CHICK Translationally-controlled tumor prote... 121 7e-28
sp|P63029|TCTP_RAT Translationally-controlled tumor protein... 120 2e-27
>sp|P91800|TCTP_SCHJA Translationally-controlled tumor protein homolog (TCTP)
Length = 169
Score = 139 bits (350), Expect = 3e-33
Identities = 62/134 (46%), Positives = 92/134 (68%)
Frame = +2
Query: 5 ITIKNGIPEDKIGGNKSADVDDEEYSDTTETQIDIVYANRLVEISYGKKEYTTYIKEYMK 184
IT+ NG+ I N S + EE SD+TE ID+V+A+RLV S+ KK Y Y+K Y+K
Sbjct: 35 ITVSNGLDSKLIAANPSGEEGQEEVSDSTERVIDLVHASRLVSTSFDKKSYRAYLKGYLK 94
Query: 185 RILDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQIT 364
I + L+ +NP+RV++F++ +Y+ + KNF +Y+ Y GE+MNP+ MV L N+RE+ +T
Sbjct: 95 AIKERLQKENPERVSIFESRINEYMVNVFKNFDDYEHYIGESMNPDGMVALMNFRENGVT 154
Query: 365 PYFIVFKDGIEEEK 406
PYF+ KDG+ EEK
Sbjct: 155 PYFVFLKDGLIEEK 168
>sp|Q10344|TCTP_SCHPO Translationally-controlled tumor protein homolog (TCTP) (p23fyp)
Length = 168
Score = 134 bits (336), Expect = 1e-31
Identities = 70/134 (52%), Positives = 91/134 (67%)
Frame = +2
Query: 5 ITIKNGIPEDKIGGNKSADVDDEEYSDTTETQIDIVYANRLVEISYGKKEYTTYIKEYMK 184
+T+K G D IG N SA+ +E + TET ++VY+ RL S+ KK Y +YIK YMK
Sbjct: 35 VTVKQGGDVD-IGANPSAEDAEENAEEGTETVNNLVYSFRLSPTSFDKKSYMSYIKGYMK 93
Query: 185 RILDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQIT 364
I L+ NP+RV VF+ NA +V +IL NFK+Y FY GE+M+P+AMV+L NYRED IT
Sbjct: 94 AIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGIT 153
Query: 365 PYFIVFKDGIEEEK 406
PY I FKDG+ EK
Sbjct: 154 PYMIFFKDGLVSEK 167
>sp|Q98SJ7|TCTP_LABRO Translationally-controlled tumor protein (TCTP)
Length = 171
Score = 132 bits (333), Expect = 3e-31
Identities = 65/129 (50%), Positives = 87/129 (67%)
Frame = +2
Query: 23 IPEDKIGGNKSADVDDEEYSDTTETQIDIVYANRLVEISYGKKEYTTYIKEYMKRILDLL 202
I + IGGN SA+V DE TT + +DIV ++L E SY KK YT YIK+YMK + L
Sbjct: 43 IDDALIGGNASAEVQDEGCESTTVSGVDIVLNHKLQETSYDKKSYTAYIKDYMKAVKAKL 102
Query: 203 KTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPYFIVF 382
+ PDRV+ F NA V +IL N K ++F+TGE+MNP+ M+ L ++RED +TPY + F
Sbjct: 103 QEVAPDRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMLFF 162
Query: 383 KDGIEEEKC 409
KDG+E EKC
Sbjct: 163 KDGLEIEKC 171
>sp|Q9DGK4|TCTP_BRARE Translationally-controlled tumor protein (TCTP)
Length = 171
Score = 130 bits (326), Expect = 2e-30
Identities = 64/129 (49%), Positives = 87/129 (67%)
Frame = +2
Query: 23 IPEDKIGGNKSADVDDEEYSDTTETQIDIVYANRLVEISYGKKEYTTYIKEYMKRILDLL 202
I + IGGN SA+V DE T+ + +DIV ++L E SY KK YT YIK+YMK + L
Sbjct: 43 IDDALIGGNASAEVADEGCDSTSVSGVDIVLNHKLQETSYDKKSYTAYIKDYMKAVKAKL 102
Query: 203 KTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPYFIVF 382
+ P+RV+ F NA V +IL N K ++F+TGE+MNP+ M+ L ++RED +TPY I F
Sbjct: 103 QESAPNRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMIFF 162
Query: 383 KDGIEEEKC 409
KDG+E EKC
Sbjct: 163 KDGLEIEKC 171
>sp|P13693|TCTP_HUMAN Translationally-controlled tumor protein (TCTP) (p23)
(Histamine-releasing factor) (HRF) (Fortilin)
sp|P61288|TCTP_PIG Translationally-controlled tumor protein (TCTP)
Length = 172
Score = 124 bits (312), Expect = 8e-29
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +2
Query: 14 KNGIPEDKIGGNKSADVDDEEYSDTTE-TQIDIVYANRLVEISYGKKEYTTYIKEYMKRI 190
+ I + IGGN SA+ + E +++T T +DIV + L E S+ K+ Y YIK+YMK I
Sbjct: 40 EGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSI 99
Query: 191 LDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPY 370
L+ + P+RV F T A + + IL NFK Y+F+ GE MNP+ MV L +YRED +TPY
Sbjct: 100 KGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPY 159
Query: 371 FIVFKDGIEEEKC 409
I FKDG+E EKC
Sbjct: 160 MIFFKDGLEMEKC 172
>sp|Q5E984|TCTP_BOVIN Translationally-controlled tumor protein (TCTP)
Length = 172
Score = 124 bits (312), Expect = 8e-29
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +2
Query: 14 KNGIPEDKIGGNKSADVDDEEYSDTTE-TQIDIVYANRLVEISYGKKEYTTYIKEYMKRI 190
+ I + IGGN SA+ + E +++T T +DIV + L E S+ K+ Y YIK+YMK I
Sbjct: 40 EGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSI 99
Query: 191 LDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPY 370
L+ + P+RV F T A + + IL NFK Y+F+ GE MNP+ MV L +YRED +TPY
Sbjct: 100 KGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPY 159
Query: 371 FIVFKDGIEEEKC 409
I FKDG+E EKC
Sbjct: 160 MIFFKDGLEMEKC 172
>sp|P43348|TCTP_RABIT Translationally-controlled tumor protein (TCTP)
Length = 172
Score = 124 bits (312), Expect = 8e-29
Identities = 63/133 (47%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +2
Query: 14 KNGIPEDKIGGNKSADVDDEEYSDTTE-TQIDIVYANRLVEISYGKKEYTTYIKEYMKRI 190
+ I + IGGN SA+ + E +++T T +DIV + L E S+ K+ Y YIK+YMK I
Sbjct: 40 EGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSI 99
Query: 191 LDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPY 370
L+ + P+RV F T A + + IL NFK Y+FY GE MNP+ MV L +YRED +TP+
Sbjct: 100 KGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFYIGENMNPDGMVALLDYREDGVTPF 159
Query: 371 FIVFKDGIEEEKC 409
I FKDG+E EKC
Sbjct: 160 MIFFKDGLEMEKC 172
>sp|Q7ZYF2|TCTP_XENLA Translationally-controlled tumor protein (TCTP)
Length = 172
Score = 122 bits (307), Expect = 3e-28
Identities = 62/133 (46%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Frame = +2
Query: 14 KNGIPEDKIGGNKSADVDDEEYSDTTETQ-IDIVYANRLVEISYGKKEYTTYIKEYMKRI 190
+ I + IGGN SA+ +++ ++ T +DIV ++L E + K Y YIK+Y+K++
Sbjct: 40 EGAIDDALIGGNASAEFQEDDVGGSSLTSGVDIVMNHKLQETGFTKDSYKNYIKDYVKQL 99
Query: 191 LDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPY 370
L+ NP+RVN F AQ+ V +IL NFK Y+FYTGE MNP+ MV L +YRED ITP+
Sbjct: 100 KAHLEKTNPERVNTFMKGAQETVKKILGNFKNYQFYTGERMNPDGMVGLLDYREDGITPF 159
Query: 371 FIVFKDGIEEEKC 409
I FKDG+ EKC
Sbjct: 160 MIFFKDGLIIEKC 172
>sp|P43347|TCTP_CHICK Translationally-controlled tumor protein (TCTP) (p23) (pCHK23)
Length = 172
Score = 121 bits (304), Expect = 7e-28
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 23 IPEDKIGGNKSADVDDEEYSDTTE-TQIDIVYANRLVEISYGKKEYTTYIKEYMKRILDL 199
I + IGGN SA+ + E ++ T T +DIV + L E S+ K+ Y YIK+YMK I
Sbjct: 43 IDDSLIGGNASAEGPEGEGTEATVITGVDIVINHHLQETSFTKESYKKYIKDYMKAIKAR 102
Query: 200 LKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPYFIV 379
L+ P+RV F T A + + IL NFK Y+F+ GE MNP+ MV L ++RED +TPY I
Sbjct: 103 LEEHKPERVKPFMTGAAEQIKHILANFKNYQFFVGENMNPDGMVALLDFREDGVTPYMIF 162
Query: 380 FKDGIEEEKC 409
FKDG+E EKC
Sbjct: 163 FKDGLEIEKC 172
>sp|P63029|TCTP_RAT Translationally-controlled tumor protein (TCTP) (Lens epithelial
protein)
sp|P63028|TCTP_MOUSE Translationally-controlled tumor protein (TCTP) (p23) (21 kDa
polypeptide) (p21)
Length = 172
Score = 120 bits (301), Expect = 2e-27
Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Frame = +2
Query: 14 KNGIPEDKIGGNKSADVDDEEYSDTTE-TQIDIVYANRLVEISYGKKEYTTYIKEYMKRI 190
+ I + IGGN SA+ + E +++T T +DIV + L E S+ K+ Y YIK+YMK +
Sbjct: 40 EGAIDDSLIGGNASAEGPEGEGTESTVVTGVDIVMNHHLQETSFTKEAYKKYIKDYMKSL 99
Query: 191 LDLLKTKNPDRVNVFKTNAQKYVTEILKNFKEYKFYTGETMNPEAMVILCNYREDQITPY 370
L+ + P+RV F T A + + IL NF Y+F+ GE MNP+ MV L +YRED +TP+
Sbjct: 100 KGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPF 159
Query: 371 FIVFKDGIEEEKC 409
I FKDG+E EKC
Sbjct: 160 MIFFKDGLEMEKC 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,963,813
Number of Sequences: 369166
Number of extensions: 1078685
Number of successful extensions: 3278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)